Did I send a .dms file? It should just be a binary
On 05/08/2018 04:25 AM, Lucia Billeci wrote:
>
>
> Thank you. However I don’t know how to open the file .dms you sent me.
> I have tried several ways but unsuccessfully. Could you please tell me
> how to open files with this extension or maybe
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Thank you. However I don’t know how to open the file .dms you sent me. I have
tried several ways but unsuccessfully. Could you please tell me how to open
files with this extension or maybe send me the file with another extension?
Best regards
Lucia
Something like
mri_segcentroid --i aseg.mgz --o centroids.dat --ctab-default
On 05/05/2018 01:06 PM, Lucia Billeci wrote:
>
> Sorry Douglas,
>
> hereafter you can find previous emails
>
> Regards
> Lucia
>
>
>
>
>
>
>
> Dear Douglas,
> thanks a lot. This can solve my problem. Could you please gi
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Sorry Douglas,
hereafter you can find previous emails
Regards
Lucia
Dear Douglas,
thanks a lot. This can solve my problem. Could you please give my some
explanations about how to open and use the tool?
Thanks
Regards
Lucia
mri_surfcluste
Please include previous emails so that I know what you are asking about.
I get a lot of emails:)
On 05/03/2018 05:07 AM, Lucia Billeci wrote:
>
>
> Dear Douglas,
>
> thanks a lot. This can solve my problem. Could you please give my some
> explanations about how to open and use the tool?
>
> Tha
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Dear Douglas,
thanks a lot. This can solve my problem. Could you please give my some
explanations about how to open and use the tool?
Thanks
Regards
Lucia
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
Dr. Lucia Billeci, PhD
Institute of Clinical Ph
mri_surfcluster only works for surfaces (that's what the "surf" in the
name means). If you want the centroid of a volume ROI use
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_segcentroids
On 05/02/2018 12:08 PM, Lucia Billeci wrote:
>
>
> Dear Bruce,
>
> the ROI appears correct in freevi
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Dear Bruce,
the ROI appears correct in freeview. However I have a problem in the following
step, i.e. obtain the centroid of the ROi.
I used the following command:
mri_surfcluster --in
/Applications/freesurfer/subjects/fsaverage/surf/lh.thickness -
Hi Lucia
the first column being -1 means that it is not mapped to the surface, so
is correct in your (subcortical) case. Try loading the label as an ROI in
freeview and see if it is correct
cheers
Bruce
On Wed, 2 May 2018, Lucia Billeci wrote:
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Dear Brouce,
thanks again.
I would like exactly how to set mri_vol2label for subcortical regions as the
way I used give me all the values of the first column equal to -1. This is a
problem when I want to obtain obtain the centroid of the ROI using
m
Hi Lucia
8 is cerebellar cortex - how could you sample it to the neocortical
surface? I'm not sure I understand what you are trying to do.
Bruce
On Mon, 30 Apr 2018, Lucia Billeci wrote:
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Dear Freesurfer Experts,
I want to use mri_vol2label to
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Dear Freesurfer Experts,
I want to use mri_vol2label to obtain labels for subcortical regions.
I tried the following command:
mri_vol2label --c $SUBJECTS_DIR/fsaverage/mri/aseg.mgz --id 8 --l
./tests_label/8.label
However I get the same vertex ind
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