Dear Freesurfer team
I am sorry to bore you again with my problems, but I need your help (or
opinion) about which is the best solution in my situation.
Is there any way to make xhemireg and surfreg (--xhemi) work in my
Freesurfer version (5.0)? Or do I need to use the 5.3 version?
I would prefer
Hello Angela,
Have you tried just running the specific commands to get the output file
you need?
https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Anthony
On 7/7/14, 10:52 AM, angela.fav...@unipd.it wrote:
Dear Freesurfer team
I am sorry to bore you again with my problems, but I
Hi Anthony,
I am not sure I understood what you are saying, but I had no problems with
recon-all commands (I already performed surface, curvature and
gyrification analyses comparing cases and controls, etc...) until I tried
to perform interhemispheric registration.
I had the same problem (see
I have been able to replicate the error with the patch in 5.1 and I'm
working on a fix.
doug
On 07/07/2014 10:52 AM, angela.fav...@unipd.it wrote:
Dear Freesurfer team
I am sorry to bore you again with my problems, but I need your help (or
opinion) about which is the best solution in my
Hi Doug,
thank you very much!
Angela
I have been able to replicate the error with the patch in 5.1 and I'm
working on a fix.
doug
On 07/07/2014 10:52 AM, angela.fav...@unipd.it wrote:
Dear Freesurfer team
I am sorry to bore you again with my problems, but I need your help (or
opinion)
OK, I have updated
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/xhemi
with new versions of mri_surf2surf and xhemireg. Copy those into
$FREESURFER_HOME/bin (after making backups of what is already there)
doug
On 07/07/2014 03:24 PM, angela.fav...@unipd.it wrote:
Hi Doug,
Hi Adam,
thank you for your mail. I am quite demoralized because I cannot get out
of my problem and I am not receiving support from the mailing list.
Which is, according to you, the solution? Do I need to install 5.3 version
and re-analyse all my subjects from the beginning?
Or do you think that I
Hi all,
I am trying again to perform Surface-based Interhemispheric Registration
in another computer (same version of FS 5.0) and by building my own atlas.
However, there is an error while running xhemireg command (please find the
log attached).
I also noted that the command xhemireg took a lot
Just to provide some additional insight,
I noticed that the xhemireg file was missing from
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/xhemi/xhemireg
the ftp on January 28th, 2014 and emailed the listserv:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg33639.html
Hi Doug
did you see my mail below? any ideas of where the problem could be?
thank you!
I am using the 5.0, but I have followed the instructions and downloaded
the new files as indicated.
the xhemi folder has some folders that are empty (bem, label, src, stats,
tmp), while the others include
Can you send the log file (or the full terminal output)?
On 06/30/2014 03:11 PM, angela.fav...@unipd.it wrote:
Hi all,
I have a problem with 'Surface-based Interhemispheric Registration'
I followed the instructions and all seem to work, but the command:
'surfreg --s $subject --t fsaverage_sym
sure! thank you
Can you send the log file (or the full terminal output)?
On 06/30/2014 03:11 PM, angela.fav...@unipd.it wrote:
Hi all,
I have a problem with 'Surface-based Interhemispheric Registration'
I followed the instructions and all seem to work, but the command:
'surfreg --s
I'm not sure why this is failing. Are there other things in the xhemi
folder? What version of FS are you using?
doug
On 07/01/2014 11:06 AM, angela.fav...@unipd.it wrote:
sure! thank you
Can you send the log file (or the full terminal output)?
On 06/30/2014 03:11 PM,
Hi all,
I have a problem with 'Surface-based Interhemispheric Registration'
I followed the instructions and all seem to work, but the command:
'surfreg --s $subject --t fsaverage_sym --lh --xhemi'
finish with the error below
(indeed in the xhemi/label directory, there is no file)
What can I do?
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