Hi Julia, I meant tksurfer-sess (not surf-sess)
doug
On 12/04/2012 05:39 AM, Julia Foecker wrote:
> Hi Doug,
> thanks for your reply.
>
> I got the following messages when running the
>
>
> surf-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE
> -retinotopy polar
>
> and there
Hi Julia, what is your command line when you give it the hemisphere?
Also, when you run it, put "-debug" as the first argument and send me
the terminal output.
doug
On 12/05/2012 10:55 AM, Julia Foecker wrote:
> Hi Doug,
>
> I tried now several things to use the tksurfer command but it does n
Don't use the -retinotopy flag. Look here
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis
for more documentation on how to visualize the results
doug
On 12/05/2012 12:15 PM, Julia Foecker wrote:
> sorry, there was a typo in the command line
>
> this is the correct ve
It should automatically detect that this was a retinotopy analysis and
then load the polar and eccen. Was this configured as a retinotopy
analysis? Can you send me the
$ANALYSIS_PHASE/analysis.info file?
doug
On 12/05/2012 04:12 PM, Julia Foecker wrote:
> Hi Doug,
>
> I tried now several wa
Julia, what version of FS are you using? It looks like pre-5.0. Can you
upgrade to 5.1? There were a lot of changes in going from 4 to 5, and it
is becoming increasingly hard to support version 4.
doug
On 12/06/2012 02:45 AM, Julia Foecker wrote:
> thanks.
> attached the info file.
>
> When I
The problem is that you have a version 4 analysis that you are trying to
view with version 5 tools. To use version 5 visualization, you'll need
to remake the analysis in version 5 and then reanalyze. Otherwise,
you'll have to use the version 4 stream (instructions attached). It is
somewhat di
Hi Julia, that command is fine. It will not use the fieldsign or eccen.
doug
On 12/10/2012 10:17 AM, Julia Foecker wrote:
> Dear Doug,
>
> I tried version 5 with the commands suggested on the webside and this is
> working
> (http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnaly
Hi Julia, I don't think it looks terrible (unfortunately:). You might
try increasing the smoothing level (maybe 10 fwhm).
doug
On 12/12/2012 08:02 AM, Julia Foecker wrote:
> Hey Doug,
>
> thanks for your reply. I tried now the polar angle mapping for the left
> hemisphere and I got the figure a
