Julia, what version of FS are you using? It looks like pre-5.0. Can you upgrade to 5.1? There were a lot of changes in going from 4 to 5, and it is becoming increasingly hard to support version 4.
doug On 12/06/2012 02:45 AM, Julia Foecker wrote: > thanks. > attached the info file. > > When I run the surf-sess command after that, it shows the functional on a > surface (see attached but the values at the occip regions show "inf." (see > figure 1 attached). > Moreover, when I try to load the occipital patch it shows me the attached file > (fig.3) and I cannot use the command -> configure -> overlay to change > settings. > > I have used fake ecc. runs (I have recorded only polar runs). > > Would you have any further suggestions? > Thanks, > Julia > > On Wed, 05 Dec 2012 17:03:31 -0500 Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote > >> It should automatically detect that this was a retinotopy analysis and >> then load the polar and eccen. Was this configured as a retinotopy >> analysis? Can you send me the >> >> $ANALYSIS_PHASE/analysis.info file? >> >> doug >> >> >> >> On 12/05/2012 04:12 PM, Julia Foecker wrote: >>> Hi Doug, >>> >>> I tried now several ways to get the maps on the surface: >>> >>> 1. When I am deleting -retinotopy flag and type in: >>> >>> >>>>> tksurfer-sess -debug -s $SESSIONNAME -hemi lh -d $SESSIONDIRECTORY >>>>> -analysis $ANALYSIS_PHASE >>> I got the message:no contrast has been specified >>> >>> (I do not have any contrasts in the analysis, just use polar angle maps) >>> >>> >>> 2. I tried to use the commands on the website you referred to, but I do not >>> have -surface in the preproc-sess (see attached) >>> The other commands depend on this preproc-sess command. >>> >>> >>> 3. I tried the following command >>> paint-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE >>> >>> >>> and I got the errors listed below... >>> >>> I am not sure how to procede. Would you have any further suggestions? >>> Many thanks, >>> Julia >>> >>> Thanks, >>> Julia >> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance HelpLine >> at http://www.partners.org/complianceline . If the e-mail was sent to you in >> error but does not contain patient information, please contact the sender and >> properly dispose of the e-mail. >> -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
