Hi Zeke,
Thank you for clarifying this, it did help. You are right the perl
version is 5.22
I will give the development version a try.
best,
mads
On 05/11/2016 04:51 PM, Z K wrote:
> Hello Mads,
>
> This is a recently discovered issue with the mni tools that ship with
> freesurfer v5.3 and t
Hello Mads,
This is a recently discovered issue with the mni tools that ship with
freesurfer v5.3 and the latest version of perl (which probably comes
with Ubuntu 16). I know the issue exists with perl version 5.22 but I
dont know with what version the issue started.
This has been fixed in th
Hi Martin,
Thanks for your reply.
rawavg.mgz and orig.mgz does exist. When I run the command I get the
following error:
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale
--i orig.mgz --o orig_nu.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri
/home/XYZ/Toolboxes/freesurfer/bin
Hi Mads,
is the file being copied (does
/home/XYZ/Projects/tmp/fs_test/test/mri/rawavg.mgz and orig.mgz exist)?
If not, maybe some disk space / IO problem.
Also what happens when you run
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i
orig.mgz --o orig_nu.mgz
dir
Dear FreeSurfer group,
I get an error trying to run basic recon-all on a ubuntu 16.04 system.
It finish with errors after a few minutes and I cannot find any help in
the recon-all.log (pasted below).
I have made the symbolic links from the installation notes.
Any ideas or thoughts on what the
