Dear FreeSurfer group,
I get an error trying to run basic recon-all on a ubuntu 16.04 system.
It finish with errors after a few minutes and I cannot find any help in
the recon-all.log (pasted below).
I have made the symbolic links from the installation notes.
Any ideas or thoughts on what the problem might be or how to track it
down would be very welcome.
best regards,
mads
from bugr:
FREESURFER_HOME: /home/XYZ/Toolboxes/freesurfer
Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Debian version: stretch/sid
Kernel info: Linux 4.4.0-22-generic x86_64
recon-all.log:
Mon May 9 11:12:07 CEST 2016
/home/XYZ/Projects/tmp/fs_test/test
/home/XYZ/Toolboxes/freesurfer/bin/recon-all
-all -subjid test -i T1.mgz
subjid test
setenv SUBJECTS_DIR /home/XYZ/Projects/tmp/fs_test
FREESURFER_HOME /home/XYZ/Toolboxes/freesurfer
Actual FREESURFER_HOME /home/XYZ/Toolboxes/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Linux comp_name 4.4.0-22-generic #39-Ubuntu SMP Thu May 5 16:53:32 UTC
2016 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 1024
memorylocked 64 kbytes
maxproc 62044
maxlocks unlimited
maxsignal 62044
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache
available
Mem: 15924580 3455984 375968 323648 12092628 11975092
Swap: 16616956 254220 16362736
########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05
21:55:16 mreuter Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version
stable5
ProgramName: tkregister2_cmdl ProgramArguments: --all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: tkregister2.c,v
1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva
(x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp: May
13 2013 16:24:28 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17
19:11:32 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08
22:18:44 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_label2label ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_label2label.c,v
1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
======= NUMBER OF OPENMP THREADS = 1 =======
ProgramName: mri_em_register ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_em_register.c,v
1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mri_ca_normalize ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:08-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_normalize.c,v
1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mri_ca_register ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_register.c,v
1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28
22:11:20 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp: May
13 2013 16:24:28 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_concatenate_lta ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_concatenate_lta.c,v
1.10 2011/03/16 21:23:48 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mri_normalize_tp2 ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_normalize_tp2.c,v
1.8 2011/03/02 00:04:23 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02
00:04:32 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp: May
13 2013 16:24:28 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:09-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_fix_topology ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_fix_topology.c,v
1.48 2011/03/02 00:04:32 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_topo_fixer ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_topo_fixer.cpp,v
1.29 2011/03/02 00:04:34 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02
00:04:27 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_euler_number ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_euler_number.c,v
1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_make_surfaces ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_make_surfaces.c,v
1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_register ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_register.c,v 1.59 2011/03/02
00:04:33 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02
00:04:34 nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_anatomical_stats ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id:
mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User:
XYZ Machine: comp_name Platform: Linux PlatformVersion:
4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_curvature_stats ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:10-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_curvature_stats.c,v
1.64 2011/03/02 00:04:30 nicks Exp $ User: XYZ Machine: comp_name
Platform: Linux PlatformVersion: 4.4.0-22-generic CompilerName: GCC
CompilerVersion: 40400
ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28
17:05:17 greve Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $
ProgramName: mri_robust_register ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id:
mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $
User: XYZ Machine: comp_name Platform: Linux PlatformVersion:
4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $
ProgramName: mri_robust_template ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id:
mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $
User: XYZ Machine: comp_name Platform: Linux PlatformVersion:
4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_and ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13
nicks Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name:
stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT BuildTimeStamp: May 13
2013 16:24:28 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $
User: XYZ Machine: comp_name Platform: Linux PlatformVersion:
4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_fuse_segmentations ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT
BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id:
mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User:
XYZ Machine: comp_name Platform: Linux PlatformVersion:
4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion:
$Name: stable5 $ TimeStamp: 2016/05/09-09:12:11-GMT BuildTimeStamp:
May 13 2013 16:24:28 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16
00:09:33 greve Exp $ User: XYZ Machine: comp_name Platform: Linux
PlatformVersion: 4.4.0-22-generic CompilerName: GCC CompilerVersion: 40400
#######################################
GCADIR /home/XYZ/Toolboxes/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /home/XYZ/Toolboxes/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/home/XYZ/Projects/tmp/fs_test/test
mri_convert /home/XYZ/Projects/tmp/fs_test/T1.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/orig/001.mgz
mri_convert /home/XYZ/Projects/tmp/fs_test/T1.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/orig/001.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/XYZ/Projects/tmp/fs_test/T1.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -0, -0)
j_ras = (0, 0, -1)
k_ras = (-0, 1, -0)
writing to /home/XYZ/Projects/tmp/fs_test/test/mri/orig/001.mgz...
#--------------------------------------------
#@# MotionCor Mon May 9 11:12:13 CEST 2016
Found 1 runs
/home/XYZ/Projects/tmp/fs_test/test/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
WARNING: only one run found. This is OK, but motion
correction cannot be performed on one run, so I'll
copy the run to rawavg and continue.
cp /home/XYZ/Projects/tmp/fs_test/test/mri/orig/001.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/rawavg.mgz
/home/XYZ/Projects/tmp/fs_test/test
mri_convert /home/XYZ/Projects/tmp/fs_test/test/mri/rawavg.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/orig.mgz --conform
mri_convert /home/XYZ/Projects/tmp/fs_test/test/mri/rawavg.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/orig.mgz --conform
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/XYZ/Projects/tmp/fs_test/test/mri/rawavg.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -0, -0)
j_ras = (0, 0, -1)
k_ras = (-0, 1, -0)
Original Data has (1, 1, 1) mm size and (256, 256, 256) voxels.
Data is conformed to 1 mm size and 256 voxels for all directions
writing to /home/XYZ/Projects/tmp/fs_test/test/mri/orig.mgz...
mri_add_xform_to_header -c
/home/XYZ/Projects/tmp/fs_test/test/mri/transforms/talairach.xfm
/home/XYZ/Projects/tmp/fs_test/test/mri/orig.mgz
/home/XYZ/Projects/tmp/fs_test/test/mri/orig.mgz
INFO: extension is mgz
#--------------------------------------------
#@# Talairach Mon May 9 11:12:19 CEST 2016
/home/XYZ/Projects/tmp/fs_test/test/mri
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale
--i orig.mgz --o orig_nu.mgz
Linux comp_name 4.4.0-22-generic #39-Ubuntu SMP Thu May 5 16:53:32 UTC
2016 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s test exited with ERRORS at Mon May 9 11:12:21 CEST 2016
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
