: [Freesurfer] recon-all on newborn
Is there any paper that you can share that can explain why recon-all is not
suitable for neonates brain apart from atlas.
Sarbani
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of
: [Freesurfer] recon-all on newborn
because neonate geometry and lack of myelin cause the brains to look so
different from what many of our algorithms expect.
cheers
Bruce
On Fri, 7 Jul 2017, Das S. wrote:
> Is there any paper that you can share that can explain why recon-all is not
> suitab
: [Freesurfer] recon-all on newborn
Is there any paper that you can share that can explain why recon-all is not
suitable for neonates brain apart from atlas.
Sarbani
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Lilla
t from atlas.
> Sarbani
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Lilla Zollei
> Sent: 06 July 2017 21:43
> To: Freesurfer support list
> Subject: Re: [Freesurfer] recon-all on ne
21:43
To: Freesurfer support list
Subject: Re: [Freesurfer] recon-all on newborn
It is not only the atlas but the tools that are different.
Lilla
On Wed, 5 Jul 2017, Das S. wrote:
> Dear Lilla,
> In that case you mean if I have my own atlas specific to neonates then I can
> follow th
o: Freesurfer support list
> Subject: Re: [Freesurfer] recon-all on newborn
>
> We use a similar pipeline but with different atlases and processing steps
> for the newborns.
> Lilla
>
> On Wed, 5 Jul 2017, Das S. wrote:
>
>>
>> Thanks for the reply. If you let me
...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei
[lzol...@nmr.mgh.harvard.edu]
Sent: 05 July 2017 22:32
To: Freesurfer support list
Subject: Re: [Freesurfer] recon-all on newborn
We use a similar pipeline but with different atlases and processing steps
for the newborns
rcellation Statistics
>Cortical Ribbon Mask
>Cortical Parcellation mapping to Aseg
>
> BW
> S Das
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei
> [lzol...@nmr.mgh.harvard.edu]
> Sent: 04 July 2
support list
Subject: Re: [Freesurfer] recon-all on newborn
Hi S Das,
We are trying to release the infant pipeline by the end of the summer.
Lilla
On Tue, 4 Jul 2017, Das S. wrote:
> Dear Freesurfer expert,
> I want to perform recon-all pipeline on neonates data.Can I do so?
> I was goin
Hi S Das,
We are trying to release the infant pipeline by the end of the summer.
Lilla
On Tue, 4 Jul 2017, Das S. wrote:
> Dear Freesurfer expert,
> I want to perform recon-all pipeline on neonates data.Can I do so?
> I was going through some mail archives and there it is said that on T1 image
Dear Freesurfer expert,
I want to perform recon-all pipeline on neonates data.Can I do so?
I was going through some mail archives and there it is said that on T1 image of
neonates data we can't perform recon-all.
But again there is another paper where it says Freesurfer can perform
segmentation o
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