Re: [Freesurfer] recon-all on newborn

2017-07-08 Thread Das S.
: [Freesurfer] recon-all on newborn Is there any paper that you can share that can explain why recon-all is not suitable for neonates brain apart from atlas. Sarbani -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of

Re: [Freesurfer] recon-all on newborn

2017-07-08 Thread Das S.
: [Freesurfer] recon-all on newborn because neonate geometry and lack of myelin cause the brains to look so different from what many of our algorithms expect. cheers Bruce On Fri, 7 Jul 2017, Das S. wrote: > Is there any paper that you can share that can explain why recon-all is not > suitab

Re: [Freesurfer] recon-all on newborn

2017-07-07 Thread Boyd, Emma
: [Freesurfer] recon-all on newborn Is there any paper that you can share that can explain why recon-all is not suitable for neonates brain apart from atlas. Sarbani -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Lilla

Re: [Freesurfer] recon-all on newborn

2017-07-07 Thread Bruce Fischl
t from atlas. > Sarbani > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Lilla Zollei > Sent: 06 July 2017 21:43 > To: Freesurfer support list > Subject: Re: [Freesurfer] recon-all on ne

Re: [Freesurfer] recon-all on newborn

2017-07-07 Thread Das S.
21:43 To: Freesurfer support list Subject: Re: [Freesurfer] recon-all on newborn It is not only the atlas but the tools that are different. Lilla On Wed, 5 Jul 2017, Das S. wrote: > Dear Lilla, > In that case you mean if I have my own atlas specific to neonates then I can > follow th

Re: [Freesurfer] recon-all on newborn

2017-07-06 Thread Lilla Zollei
o: Freesurfer support list > Subject: Re: [Freesurfer] recon-all on newborn > > We use a similar pipeline but with different atlases and processing steps > for the newborns. > Lilla > > On Wed, 5 Jul 2017, Das S. wrote: > >> >> Thanks for the reply. If you let me

Re: [Freesurfer] recon-all on newborn

2017-07-05 Thread Das S.
...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei [lzol...@nmr.mgh.harvard.edu] Sent: 05 July 2017 22:32 To: Freesurfer support list Subject: Re: [Freesurfer] recon-all on newborn We use a similar pipeline but with different atlases and processing steps for the newborns

Re: [Freesurfer] recon-all on newborn

2017-07-05 Thread Lilla Zollei
rcellation Statistics >Cortical Ribbon Mask >Cortical Parcellation mapping to Aseg > > BW > S Das > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei > [lzol...@nmr.mgh.harvard.edu] > Sent: 04 July 2

Re: [Freesurfer] recon-all on newborn

2017-07-04 Thread Das S.
support list Subject: Re: [Freesurfer] recon-all on newborn Hi S Das, We are trying to release the infant pipeline by the end of the summer. Lilla On Tue, 4 Jul 2017, Das S. wrote: > Dear Freesurfer expert, > I want to perform recon-all pipeline on neonates data.Can I do so? > I was goin

Re: [Freesurfer] recon-all on newborn

2017-07-04 Thread Lilla Zollei
Hi S Das, We are trying to release the infant pipeline by the end of the summer. Lilla On Tue, 4 Jul 2017, Das S. wrote: > Dear Freesurfer expert, > I want to perform recon-all pipeline on neonates data.Can I do so? > I was going through some mail archives and there it is said that on T1 image

[Freesurfer] recon-all on newborn

2017-07-04 Thread Das S.
Dear Freesurfer expert, I want to perform recon-all pipeline on neonates data.Can I do so? I was going through some mail archives and there it is said that on T1 image of neonates data we can't perform recon-all. But again there is another paper where it says Freesurfer can perform segmentation o