Thanks for the reply. If you let me know, among the below list of steps of
current recon-all, currently which is not suitable to perform on neonates MRI
image, will really appreciate.
Autorecon Processing Stages:
Motion Correction and Conform
NU (Non-Uniform intensity normalization)
Talairach transform computation
Intensity Normalization 1
Skull Strip
EM Register (linear volumetric registration)
CA Intensity Normalization
CA Non-linear Volumetric Registration
Remove Neck
LTA with Skull
CA Label (Volumetric Labeling, ie Aseg) and Statistics
Intensity Normalization 2 (start here for control points)
White matter segmentation
Edit WM With ASeg
Fill (start here for wm edits)
Tessellation (begins per-hemisphere operations)
Smooth1
Inflate1
QSphere
Automatic Topology Fixer
Final Surfs (start here for brain edits for pial surf)
Smooth2
Inflate2
Spherical Mapping
Spherical Registration
Spherical Registration, Contralateral hemisphere
Map average curvature to subject
Cortical Parcellation - Desikan_Killiany and Christophe (Labeling)
Cortical Parcellation Statistics
Cortical Ribbon Mask
Cortical Parcellation mapping to Aseg
BW
S Das
________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei
[lzol...@nmr.mgh.harvard.edu]
Sent: 04 July 2017 22:04
To: Freesurfer support list
Subject: Re: [Freesurfer] recon-all on newborn
Hi S Das,
We are trying to release the infant pipeline by the end of the summer.
Lilla
On Tue, 4 Jul 2017, Das S. wrote:
> Dear Freesurfer expert,
> I want to perform recon-all pipeline on neonates data.Can I do so?
> I was going through some mail archives and there it is said that on T1 image
> of neonates data we can't perform recon-all.
> But again there is another paper where it says Freesurfer can perform
> segmentation of neonates image.
> Any input will be appreciated.
> Thanks
> S Das
>
>
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> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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