Re: [Freesurfer] recon-all stops in CORRECTING DEFECT

2019-05-07 Thread Bruce Fischl
Hi Marina it looks like there is something connected to the wm posteriorly, but impossible to tell from the inflated surface what it is. If you tar and gzip the entire subject dir and put it on our ftp site someone here will take a look cheers Bruce On Tue, 7 May 2019, Marina Fernández wrote

Re: [Freesurfer] recon-all stops in CORRECTING DEFECT

2019-04-25 Thread Bruce Fischl
Hi Marina there is a tutorial on fixing defects you can look at here: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview?highlight=%28tutorial%29%7C%28topology%29 I find the best way to do this is to load the lh.orig.nofix and lh.inflated.nofix (or the rh), then lo