Re: [Freesurfer] sagittal slices

2015-06-11 Thread Douglas N Greve
Do you not have the image in something other than analyze? If not, then just keep playing with the letters (ie, PIR) until you get it right. Note that you will not know what is left and right unless you have a fiducial on the subject doug On 06/11/2015 04:19 PM, Kriegel, Jennifer Lynn Sarai wr

[Freesurfer] sagittal slices

2015-06-11 Thread Kriegel, Jennifer Lynn Sarai
I used the following command to convert a sagittal slice from analyze to mgz format. The original was acquired in an anterior to posterior/right to left angle of slices. However, while it is converting to an mgz properly, it seems to be giving me a flip upside down, and reverting to transverse o