I used the following command to convert a sagittal slice from analyze to mgz format. The original was acquired in an anterior to posterior/right to left angle of slices. However, while it is converting to an mgz properly, it seems to be giving me a flip upside down, and reverting to transverse orientation. How do I specify for the sagittal slice? Thanks. $FREESURFER_HOME/bin/mri_convert \ $SUBJECTS_DIR/fmri35_MPRAGE_o17/fmri35_MPRAGE_o17_0001.img -it analyze --in_orientation PIR \ $SUBJECTS_DIR/fmri35_o17/mri/orig/001.mgz
- Jennifer Lynn Sarai Kriegel MS in Psychological Sciences, Cognition and Neuroscience Emphasis Functional Neuroimaging of Memory Lab, Center for Vital Longevity The University of Texas at Dallas jlk130...@utdallas.edu<mailto:jlk130...@utdallas.edu> ------------------------------------------------------------ I am looking for a lot of men who have an infinite capacity to not know what can't be done. - Henry Ford The important thing is not to stop questioning. Curiosity has its own reason for existing. - Albert Einstein
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