Re: [Freesurfer] sig.cluster.summary and sig.cluster.mgh of mri_glmfit-sim

2020-05-05 Thread Douglas N. Greve
but when you click on the vertex, is the value in the freeview the same value in the summary file? Note, you must load the sig.mgh file, not the corrected map. On 5/5/2020 4:58 PM, Xiaojiang Yang wrote: External Email - Use Caution Hi Douglas, Not only vertex 10738. For all vertexes

Re: [Freesurfer] sig.cluster.summary and sig.cluster.mgh of mri_glmfit-sim

2020-05-05 Thread Xiaojiang Yang
External Email - Use Caution Hi Douglas, Not only vertex 10738. For all vertexes listed in the summary file, they all have a very big Max value (absolute) that is out of the visual range. Please see the video I grabbed from my screen: https://imgur.com/a/kkSO7sT *Thank you for

Re: [Freesurfer] sig.cluster.summary and sig.cluster.mgh of mri_glmfit-sim

2020-05-05 Thread Douglas N. Greve
Not sure. Are you visiting vertex 10738 ? On 5/4/2020 10:01 PM, Xiaojiang Yang wrote: External Email - Use Caution Hi FS developers, I have used mri_glmfit-sim to do multiple comparison like below: mri_glmfit-sim --glmdir lh.thickness.0.glmdir --cache 3 abs --cwp  0.05 --2spaces

[Freesurfer] sig.cluster.summary and sig.cluster.mgh of mri_glmfit-sim

2020-05-04 Thread Xiaojiang Yang
External Email - Use Caution Hi FS developers, I have used mri_glmfit-sim to do multiple comparison like below: mri_glmfit-sim --glmdir lh.thickness.0.glmdir --cache 3 abs --cwp 0.05 --2spaces and in the lh.thickness.0.glmdir/group.diff directory, I got some output files,