Re: [Freesurfer] smoothing only on cortex when using mris_preproc

2018-08-29 Thread Douglas N. Greve
Yes, that is what the cortex flag is for. mris_preproc should automatically use the cortex flag On 08/25/2018 05:06 PM, Alon Baram wrote: > > External Email - Use Caution > > Hello, > > When smoothing with mri_surf2surf, it's possible to use the --cortex > flag to constrain the smoothing

[Freesurfer] smoothing only on cortex when using mris_preproc

2018-08-25 Thread Alon Baram
External Email - Use Caution Hello, When smoothing with mri_surf2surf, it's possible to use the --cortex flag to constrain the smoothing only to cortex (exclude the medial wall and zero it out). Is there a way to tell mris_preproc to do the same (i.e to pass the --cortex flag whe