Yes, that is what the cortex flag is for. mris_preproc should automatically use the cortex flag
On 08/25/2018 05:06 PM, Alon Baram wrote: > > External Email - Use Caution > > Hello, > > When smoothing with mri_surf2surf, it's possible to use the --cortex > flag to constrain the smoothing only to cortex (exclude the medial > wall and zero it out). > > Is there a way to tell mris_preproc to do the same (i.e to pass the > --cortex flag when it calls mri_surf2surf? > > thanks! > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
