Re: [Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-10 Thread Douglas N Greve
you mean just doing a simple volume smoothing? Just use mri_fwhm (make sure to use the --smooth-only option) doug On 01/10/2014 01:27 PM, Caspar M. Schwiedrzik wrote: > Hi Doug, > for this analysis, I would like to stay in volume space; the data are > aligned to a primate volume template. I am

Re: [Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-10 Thread Caspar M. Schwiedrzik
Hi Doug, for this analysis, I would like to stay in volume space; the data are aligned to a primate volume template. I am trying to do a group analysis of the functional data as a next step (see this previous email: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg33295.html). If I jus

Re: [Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-10 Thread Douglas N Greve
If you just want to sample your volume on the surface and smooth it there, use mri_vol2surf with --surf-fwhm. Send me your command line when you have one and I'll verify it is the right thing. doug On 01/09/2014 10:21 PM, Caspar M. Schwiedrzik wrote: > Hi Doug, I found a way to build it in myse

Re: [Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-09 Thread Caspar M. Schwiedrzik
Hi Doug, I found a way to build it in myself. I am using spatialsmooth-sess from v5.1. I need to smooth some functional data that I have preprocessed through some other program until this point. What should I be using instead of spatialsmooth-sess if I only want to smooth? Thanks, Caspar On Thursd

Re: [Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-09 Thread Douglas Greve
No, sorry. Why are you using such an old version? doug On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote: Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar ___ Freesurfer mailing list Free

[Freesurfer] spatialsmooth-sess with option to set mask file name

2014-01-09 Thread Caspar M. Schwiedrzik
Hi Doug, do you have a version of spatialsmooth-sess with the option to set mask file name? Thanks, Caspar ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-