Dear FS experts,
I run recon all on several patients, manual edited all the outputs and
rerun recon all. I'm interested in subcortical segmentation and I
extracted all the data with the aseg stats command. Is it now possible
to select a structure (let's say the accumbens) and save it as a
Hi Fabrizio,
You can use mri_extract_label for this. You need to specify the index
number of the structure which you can find here:
$FREESURFER_HOME/FreeSurferColorLUT.txt
On Tue, 15 Feb 2011, fabrizio piras wrote:
Dear FS experts,
I run recon all on several patients, manual edited all the
sure. mri_binarize or mri_extract_label will do this for you (see the
FreeSurferColorLUT.txt file for the correct indices to use)
cheers
Bruce
On Tue, 15 Feb
2011, fabrizio piras wrote:
Dear FS experts,
I run recon all on several patients, manual edited all the outputs and
rerun recon all.
