sure. mri_binarize or mri_extract_label will do this for you (see the FreeSurferColorLUT.txt file for the correct indices to use)
cheers Bruce On Tue, 15 Feb 2011, fabrizio piras wrote: > Dear FS experts, > I run recon all on several patients, manual edited all the outputs and > rerun recon all. I'm interested in subcortical segmentation and I > extracted all the data with the aseg stats command. Is it now possible > to select a structure (let's say the accumbens) and save it as a .nii > (or wathever format) ROI in ordero to export it and open it with other > softwares (e.g. mricron, fsl etc)? > thank you in advance > Fabrizio Piras > --------------------------- > Fabrizio Piras Ph.D. > --------------------------- > Fondazione I.R.C.C.S. Santa Lucia > Laboratorio di Neuropsichiatria > via Ardeatina 306 > tel +390651501547 > fax +390651501213 > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
