[Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Juranek, Jenifer
Not exactly sure how or what happened...but did manage to fix my tksurfer display problem. Since others on the list had reported similar problems, I thought I'd post what I did to fix the problem. Since I'm not a Linux guru, my fix is probably just a bandaid...but it did work...and hopefully

Re: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Nick Schmansky
Jenifer, Thanks for the detailed info! Just to be clear, does your current /etc/X11/xorg.conf have the line: Load glx glx is OpenGL on X-Windows, allowing X windows apps, like tksurfer, to run using OpenGL, for accelerated graphics. Ideally, you want to load glx. Nick On Fri,

RE: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Nick Schmansky
Schmansky [mailto:[EMAIL PROTECTED] Sent: Fri 5/30/2008 1:31 PM To: Juranek, Jenifer Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] tksurfer display broken: fixed Jenifer, Thanks for the detailed info! Just to be clear, does your current /etc/X11/xorg.conf have the line: Load

RE: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Paul Raines
me know if I can provide any additional info Cheers, Jenifer -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Fri 5/30/2008 1:31 PM To: Juranek, Jenifer Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] tksurfer display broken: fixed Jenifer, Thanks

[Freesurfer] tksurfer display broken: post re-install nvidia 9746

2008-05-29 Thread Juranek, Jenifer
I re-installed the dell-nvidia driver (original with system). Some new behavior observed with bert: tksurfer bert lh pial yields a complete bert window (entire pial surface is displayed). However, the lower window TkSurfer Tools is not visible. Also, tkmedit bert norm.mgz fails to launch a

[Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Juranek, Jenifer
Krish Paul, Many thanks for the quick advice. I have downloaded the mesa-libGL-6.5.1-7.2.el5.x86_64.rpm from the RH network to my desktop. However, a smart window pops up reporting that a newer version than /home/jjuranek/Desktop/mesa-libGL-6.5.1-7.2.el5.x86_64.rpm is already installed. I

Re: [Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Paul Raines
I don't understand why you got a mesa-libGL rpm and are trying to install it? I think doing so could really mess up your system so it is a good thing it is not letting you. My email was about adding Section Extensions Option Composite Disable EndSection to your /etc/X11/xorg.conf

RE: [Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Juranek, Jenifer
@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer display broken: smart over-ride? I don't understand why you got a mesa-libGL rpm and are trying to install it? I think doing so could really mess up your system so it is a good thing it is not letting you. My email was about adding Section

RE: [Freesurfer] tksurfer display broken: smart over-ride?

2008-05-28 Thread Paul Raines
-Original Message- From: Paul Raines [mailto:[EMAIL PROTECTED] Sent: Wed 5/28/2008 10:10 AM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer display broken: smart over-ride? I don't understand why you got a mesa-libGL rpm and are trying

[Freesurfer] tksurfer display broken

2008-05-27 Thread Juranek, Jenifer
Hi, I recently encountered a problem with tksurfer display (worked perfectly fine a couple of weeks ago). The only change I've made to my linux (centOs 5) system is the recent installation of MATLAB r2008a. Just a note: This was *not* a fun process since the MATLAB 2008a install required

Re: [Freesurfer] tksurfer display broken

2008-05-27 Thread Krish Subramaniam
Others ( Paul, Nick) might chip in with a much better answer but my guess is your problem might be related to this thread earlier on the list.. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07324.html --Krish On May 27, 2008, at 11:30 AM, Juranek, Jenifer wrote: Hi, I

Re: [Freesurfer] tksurfer display broken

2008-05-27 Thread Paul Raines
This maybe the composite issue if the NVIDIA driver is in use. Edit your /etc/X11/xorg.conf file and put in it: Section Extensions Option Composite Disable EndSection and restart On Tue, 27 May 2008, Krish Subramaniam wrote: Others ( Paul, Nick) might chip in with a much better