Hello,
I'm running bedpostx_seychelles from the seychelles prompt (via trac-all
-bedp -c $SUBJECTSDIR/[dmrircfile]) with vers. v5.1.0-20110514. The
processes are generated and run correctly, as far as I can see, until the
post-processing job. I receive and email stating:
PBS Job Id:
Hi Sean,
You should look at the Exit_status. If it is '0', then your job ran
successfully. If it is '1' or something else, then there is an error. So
it looks like your job ran correctly.
Priti
Hello,
I'm running bedpostx_seychelles from the seychelles prompt (via trac-all
-bedp -c
Hi Priti,
Thanks, but would seem that despite the 0 status, something didn't run
correctly. trac-all -path cannot find the file merged_ph1samples.nii.gz.
Actually none of expected bedpostx files, other than nodif_brain_mask have
been created in the dmri.bedpostx folder.
-Sean
Hi Sean,
You
Do not run your jobs on seychelles. Most nodes are still CentOS4 and I
think a lot of the tools are simply not going to run on CentOS4 anymore.
Run them on launchpad and if you still get errors then we need to investigate.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Mon, 4 Jun 2012
Hi Sean,
Are you sourcing Freesurfer stable 5.1 in seychelles? trac-all -bedp is
supposed to submit multiple jobs (one job for each slice, in addition to
bedpostx_pre and bedpostx_post).. When you ran trac-all -bedp did it
submit all of those jobs?
Priti
Hi Priti,
Thanks, but would seem that
