[Freesurfer] tracula - submit via fsl_sub / qsub ?

2012-02-29 Thread Andi Heckel
Dear Tracula Team, recently i ran trac-all (-prep / -bedp / -path), but I happened to submit the commands to our SGE computer cluster using fsl_sub (which is fsl's wrapper for qsub) According to the header comments of the trac-all script, however, trac-all should not be submitted to a

Re: [Freesurfer] tracula - submit via fsl_sub / qsub ?

2012-02-29 Thread Anastasia Yendiki
Hi Andi - Thanks for your kind words! As explained on the trac-all wiki page (and also the help text you get from trac-all --help), the part about not submitting trac-all with pbsubmit is specific to our local Martinos Center users. That's b/c we've modified fsl_sub (and bedpostx) to work