Freesurfer support list
Date: Friday, 20 April 2018 at 19:40
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
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Thanks for the quick evaluation.
So your conclusion based on this evaluation is to the use the –hires flag?
Jim
“The
...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Iglesias Gonzalez,
Eugenio
Sent: Friday, April 20, 2018 12:27 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Thanks Jim,
The
Friday, 20 April 2018 at 17:46
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Eugenio,
I have uploaded a dataset for you to review. The file is
‘chd_auck_Bs44_6yr_fs.zip’.
It was processed with the following command using F
: Friday, April 20, 2018 9:23 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Of course!
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging
of "Alexopoulos,
Dimitrios"
Reply-To: Freesurfer support list
Date: Friday, 20 April 2018 at 14:44
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
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Thanks for the input Eugenio.
Could you review one of our submil
Iglesias Gonzalez,
Eugenio
Sent: Friday, April 20, 2018 7:58 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
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You can but recon-all will resize to 1mm isotropic and you’ll lose your submil
resolution.
Of course, you could
pport list
Subject: Re: [Freesurfer] using T2 for hippo subfields
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Ok. Can you run -hippocampal-subfields-T1 without the -hires flag using a
submillimeter T1?
Jim
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Iglesia
:24:59 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Sorry, I’m not sure I follow. But, if you run recon-all with the hires flag,
then you can just run –hippo-subfields-T1 and it’ll take advantage of the high
resolution
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: on behalf of "Alexopoulos,
Dimitrios"
Reply-To: Freesurfer support list
Date: Friday, 20 April 2018 at 01:34
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo
: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Hi Jim,
>From my experience .8 isotropic is on the edge. Did you take a look at the
>output? You can always send us the data if you want us to take a look.
Cheers,
/Eugenio
--
Juan E
Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Wednesday, April 04, 2018 7:52 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
no it is not required
option?
>
> Jim
>
> __
> __
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> on behalf of Alexopoulos,
> Dimitrios
> Sent: Sunday, March 25, 2018 9:47:07 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] using T2 for hippo subfields
>
> Than
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of
Alexopoulos, Dimitrios
Sent: Sunday, March 25, 2018 9:47:07 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
Thanks for the input. I processed a few subjects (T1-mprage, 0.8mm isotropic)
using
ubject: Re: [Freesurfer] using T2 for hippo subfields
Thanks for the input. I processed a few subjects (T1-mprage, 0.8mm isotropic)
using the -hires flag, with no expert file, which generated nice surfaces.
Is an 'expert_file' required ??
Jim
F
f Iglesias Gonzalez,
Eugenio
Sent: Friday, March 23, 2018 11:02:00 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
Hi Jim,
In the end it’s an empirical question, but my gut feeling is that the T1 with
hi-res flag will be best.
Cheers,
/E
--
Juan Eugeni
behalf of "Alexopoulos,
Dimitrios"
Reply-To: Freesurfer support list
Date: Friday, 23 March 2018 at 16:00
To: Freesurfer support list
Subject: [Freesurfer] using T2 for hippo subfields
Hi. We are acquiring sequences on a pediatric cohort that include a T1-mprage
(0.8mm isotropic
Hi. We are acquiring sequences on a pediatric cohort that include a T1-mprage
(0.8mm isotropic) and a T2-space (1mm isotropic), and I'd like to run the
hippocampal subfields module on the subjects using FS 6.0.
Is it recommended/useful to run the multispectral segmentation mode with the
additio
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