[Freesurfer] version 5.2 white surface bug

2013-05-08 Thread Luigi Angelo Maglanoc
Dear Freesurfer experts, I have recently read the thread about issues with version 5.2 concerning white surface and pial surface http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28340.html All of the structural data has been through the longitudinal processing stream using

Re: [Freesurfer] version 5.2 white surface bug

2013-05-08 Thread Martin Reuter
Hi Luigi, as it affects the surfaces you should rerun the base with recon-all -base templateID -tp tp1id -tp tp2id ... -white -smooth2 -inflate2 -autorecon3 -curvstats (replace ... with additional time points if necessary). That should bring the base up to date. For the long you should