Hi Luigi,
as it affects the surfaces you should rerun the base with
recon-all -base <templateID> -tp <tp1id> -tp <tp2id> ... -white -smooth2
-inflate2 -autorecon3 -curvstats
(replace "..." with additional time points if necessary). That should
bring the base up to date.
For the long you should try the same:
recon-all -long <tp?id> <templateID> -white -smooth2 -inflate2 -autorecon3
-curvstats
Disclaimer: this has not been tested in the longitudinal stream. You can
test it by running a subject (probably best if it is without edits)
through 5.3 and also apply the above fixes to the 5.2 version and compare.
Best, Martin
On 05/08/2013 07:47 AM, Luigi Angelo Maglanoc wrote:
Dear Freesurfer experts,
I have recently read the thread about issues with version 5.2 concerning
white surface and pial surface
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28340.html
All of the structural data has been through the longitudinal
processing stream
using freesurfer version 5.2. I am wondering if it is sufficient to run
recon-all -s <subjid> \
-white \
-autorecon3 \
-nosphere \
-nosurfreg
for the base data and the final longitudinal data? Or do I have to
rerun the whole longitudinal processing and redo any corrections that
have been made?
Thank you in advance!
Sincerely
Luigi Maglanoc
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Dr. Martin Reuter
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology - Harvard Medical School
MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
