[Freesurfer] winkler surf data with qdec ?

2012-12-06 Thread Gregory Kirk
Hi , I have winkler variety surface area data that is already smoothed and converted to vertex wise data on my average subject. Each subject has a file rh.ico7.fwhm10.mgh, lh... and Doug gave me a way with mri_concat to assemble the data into a single file so i can run command line mri_glmfit type

Re: [Freesurfer] winkler surf data with qdec ?

2012-12-07 Thread Anderson M. Winkler
Hi Greg, It's ok to smooth using FS tools, as long as the different sizes of the faces of the ico7 are taken into account. This means that, after running "rpncalc", the "smoothdpx" command can be skipped, and the data can be converted to vertexwise and imported into qdec, which will then smooth it

Re: [Freesurfer] winkler surf data with qdec ?

2012-12-10 Thread Nick Schmansky
Greg, one of the -qcache outputs is named 'fwhm0', which will be unsmoothed. you can also specify creation of just that file by adding '-fwhm 0' after the -qcache flag. Nick > Hi , > > I have winkler variety surface area data that is already smoothed and > converted to vertex wise data on my a