Re: [Freesurfer] wm topological defects

2017-09-06 Thread Ruotsalainen, Ilona
Aihe: Re: [Freesurfer] wm topological defects Hi Ilona yes, you only need to edit the wm in regions where inaccuracies in the wm.mgz are making the surfaces inaccurate cheers Bruce On Wed, 6 Sep 2017, Ruotsalainen, Ilona wrote: > Dear experts, > > I would have a follow up

Re: [Freesurfer] wm topological defects

2017-09-06 Thread Bruce Fischl
tiistai 4. heinäkuuta 2017 20:43 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] wm topological defects Hi Manuel you should examine the ?h.white and ?h.pial for accuracy, and only use the .nofix surfaces if you are trying to figure out wh

Re: [Freesurfer] wm topological defects

2017-07-04 Thread Bruce Fischl
Hi Manuel you should examine the ?h.white and ?h.pial for accuracy, and only use the .nofix surfaces if you are trying to figure out why the white/pial are not as accurate as you would like Bruce On Tue, 4 Jul 2017, Manuel Delgado wrote: > Dear all: > Regarding wm edits, it is shown in the

[Freesurfer] wm topological defects

2017-07-04 Thread Manuel Delgado
Dear all: Regarding wm edits, it is shown in the tutorial how to proceed with "holes" that appear in the smoothwm.nofix. However, those holes do not necessarily affect the wm matter surface. So is it recommendable to check if holes in the smoothwm.nofix surface affect the real wm surface before