Re: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems)

2006-08-01 Thread Doug Greve
e 8/1/2006 2:27 PM To: Faden, Eric (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems) can you give us details about how you did the conversion? On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: Upon fu

RE: [Freesurfer] Vanishing Control Points

2006-08-01 Thread Bruce Fischl
er doesn't. Should I add blank slices to bring it to 256? -Eric -Original Message- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Tue 8/1/2006 2:04 PM To: Faden, Eric (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Vanishing Control Points what volume are you

RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems)

2006-08-01 Thread Faden, Eric (NIH/NIMH) [F]
/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems) can you give us details about how you did the conversion? On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: > Upon further investigation it seems to be someth

RE: [Freesurfer] Vanishing Control Points

2006-08-01 Thread Faden, Eric (NIH/NIMH) [F]
mri_convert -c worked. -Eric -Original Message- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Tue 8/1/2006 2:39 PM To: Faden, Eric (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Vanishing Control Points no, you should use mri_convert -c to "co

RE: [Freesurfer] Vanishing Control Points

2006-08-01 Thread Faden, Eric (NIH/NIMH) [F]
urfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Vanishing Control Points what volume are you selecting them on? Make sure that it has been "conformed" - that is, that it's 256^3 and 1mm isotropic. On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: > I am currently running 3.0.3 on Re

RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems)

2006-08-01 Thread Bruce Fischl
can you give us details about how you did the conversion? On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: Upon further investigation it seems to be something wrong with my conversion from MNC to MGZ. I have tried the exact same scan going through Analyze to MGZ and the control points

Re: [Freesurfer] Vanishing Control Points

2006-08-01 Thread Bruce Fischl
what volume are you selecting them on? Make sure that it has been "conformed" - that is, that it's 256^3 and 1mm isotropic. On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: I am currently running 3.0.3 on RedHat EL v4. Whenever I load up a brain and try to draw control points I can see

RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems)

2006-08-01 Thread Faden, Eric (NIH/NIMH) [F]
Upon further investigation it seems to be something wrong with my conversion from MNC to MGZ. I have tried the exact same scan going through Analyze to MGZ and the control points work fine. Has anyone had any issues converting between mnc and mgz? -Eric -Original Message- From: Faden