Hi Veronica,
we haven't seen that before. Can you upload your subject including the
FLAIR and we'll take a look?
thanks
Bruce
On Mon, 15 Apr 2013, Popescu, Veronica wrote:
Dear all,
I have already run the FreeSurfer 5.2 -all, and I would like to improve the
pial surface recongition using
Veronica,
Hi, can you copy me on the subject data upload? You can upload data
here:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Nick
On Mon, 2013-04-15 at 12:30 -0400, Bruce Fischl wrote:
> Hi Veronica,
>
> we haven't seen that before. Can you upload your subject including th
l
surface!)
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
[fis...@nmr.mgh.harvard.edu]
Sent: Monday, April 15, 2013 12:31 PM
To: Popescu, Veronica
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] pial su
15
To: Bruce Fischl; Popescu, Veronica
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] pial surface with FLAIR
Hi Veronica,
Did you try initially doing "recon-all -i $FLAIR -s $SUBJECT"?
And then, when you do the remaining recon-all steps:
recon-all -autorecon3 -s $S
reesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Monday, April 15, 2013 12:31 PM
> To: Popescu, Veronica
> Cc: 'freesurfer@nmr.mgh.harvard.edu'
> Subject: Re: [Freesurfer] pial surface with FLAIR
>
> Hi Veron
> Best wishes,
> Veronica
>
> -Original Message-
> From: Watson, Christopher [mailto:christopher.wat...@childrens.harvard.edu]
> Sent: Tuesday, 16 April, 2013 07:15
> To: Bruce Fischl; Popescu, Veronica
> Cc: 'freesurfer@nmr.mgh.harvard.edu'
> Subje
, 2013 15:02
To: Popescu, Veronica
Cc: 'Watson, Christopher'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] pial surface with FLAIR
Hi Veronica
what recon-all command lines did you run? You did run it with a T1 first, right?
Bruce
On Tue, 16 Apr 2013, Popescu, V
you very much!
> Best wishes,
> Veronica
>
> -Original Message-
> From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
> Sent: Tuesday, 16 April, 2013 15:02
> To: Popescu, Veronica
> Cc: 'Watson, Christopher'; 'freesurfer@nmr.mgh.harvard.edu'
>
vard.edu]
> > Sent: Tuesday, 16 April, 2013 15:02
> > To: Popescu, Veronica
> > Cc: 'Watson, Christopher'; 'freesurfer@nmr.mgh.harvard.edu'
> > Subject: RE: [Freesurfer] pial surface with FLAIR
> >
> > Hi Veronica
> >
> > what recon-all
