External Email - Use CautionHello! Could I request for password to unzip ova.7z file: FS_7_2_0_ubuntu_18_04_06.ova Thanks,Andrei___
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Freesurfer@nmr.mgh.harvard.edu
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On MacOS I would try running the fs_install_mcr script with,
$ export FREESURFER_HOME=/Applications/freesurfer/7.3.2
$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
... output showing SUBJECTS_DIR and other environment variables
$ cd
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Hello FreeSurfer Experts,
I converted the aseg.mgz file to aseg.nii using mri_convert command,
the aseg.mgz file is located in the directory below based on your tutorial:
tutorial_data_20190918_1558/practice_with_data/Subj001/mri
When I open the
Hello,
If you have T1 images that have been processed with FreeSurfer, you can use the
script 'segmentHA_T1.sh' to automatically segment hippocampal subfields.
Best,
Jackson
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of PRASAD D
Sent: Monday,
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Hi,
Yes you are right! Taking out the -parallel solved the issue! Does this
mean v7 longitudinal recon-all does not support this flag?
I have one other question, any help would be appreciated. I ran the
baseline recon-all with the -bv (big ventricles)
Hi Haiyun
We reslice everything to coronal as part of the recon process. If you want to
map it back to the original orientation I think something like this should work:
mri_convert -rt nearest -rl rawavg.mgz aseg.mgz aseg.original_orientation.mgz
cheers
Bruce
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