From: Fields, Christopher J [mailto:cjfie...@illinois.edu]
[SNIP] if you follow the guidelines for FTP import, any method used
(not just FTP, but scp, sftp, grid-ftp, etc.) to get data into the 'FTP'
import
folder works as long as permissions on the data are set so the galaxy user on
the
Hi,
I just updated my local Galaxy installation to the latest version. I am
trying out the feature to add tools directly from the toolshed, but this
is not working. It results in this error:
File
Hello Mattias,
Did you pull from the Galaxy central repo? The latest change set is
7262:4fbd05095ca7, which is what you should be running in order to use the tool
shed. Let me know if you in fact have the latest from central - your line
numbers in your log below look to be different from
Hi,
I am data curator on the ENCODE project. I was looking at the file
formats that you support:
http://galaxy.genenetwork.org:8080/static/formatHelp.html
http://galaxy.genenetwork.org:8080/static/formatHelp.html%29 and was
wondering if you had any file validation software you were using?
Hello,
I get an error when trying to upgrade my mysql db with sh manage_db.sh
upgrade from version 94-95 (see below).
Will cause problems with my installation?
sh manage_db.sh upgrade
93 - 94...
Migration script to create handler column in job table.
done
94 - 95...
Migration script to
Hi Liisa,
This won't cause any problems with your instance; if you use tools in
Trackster, they'll run a tad slower due to this problem.
We'll fix this soon, and then you can downgrade/upgrade to create the requisite
index if you want.
Best,
J.
On Jun 13, 2012, at 2:22 PM, Liisa Koski
Hi Greg
Thanks for the tip. The .file items appear when I tar the directory on my Mac,
so I work around that issue and tar the directory on a UNIX server. Thus said I
happily did the same with another directory that contains tools that are all
dependent on the tool_data_table_conf.xml.sample
To stop users forgetting whether they're on our development or production
servers I'd like to put a simple script in welcome.html to echo the hostname
(or some other stuff)
I've tried both javascript and php but no luck. Is this supported or should I
dig further into our Apache config?
Or is
It does of course work, just my scripting skills have faded with lack of use :(
--Russell
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Smithies, Russell
Sent: Thursday, 14 June 2012 10:37 a.m.
To: galaxy-dev@lists.bx.psu.edu
Subject:
You can probably modfiy /home/galaxy/.sge_request to make it work for now, but
for portability of tools I'd still recommend the requirements tag. Changes
to .sge_request will not be persisted after shutdown, so you'll have to redo it
with each new cluster.
On Jun 13, 2012, at 9:25 PM, Jose
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