Hi all,
My apologies for reposting this, but I thought I ought have asked this in a
separate thread instead of appending it to a previous message. Anyway, I
was able to set up a folder for a user (in my case, my own non-admin user
account). universe_wsgi.ini's been configured to allow users to
Ok, found it!
The 'id_secret' parameter in the universe_wsgi.ini was just too long. But I
think something changed there, because we didn't change the id_secret, and it
was working before.
Anyway, now it's working!
Cheers,
Sajoscha
On Jun 27, 2012, at 4:09 PM, Sajoscha Sauer wrote:
Hi,
Hi all,
I have added some tools to my local install of Galaxy. To get to my final
results I have to do a lot of steps. When I try to run every step separately
it turns out to work out fine. But when I try to run all steps at once with a
workflow I get the following error message.
Hi Jaap
are you using 'SQLite', if so, I recommend to switch to 'PostgreSQL',
see:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server/#Switching_to_a_database_server
Regards, Hans
On 07/02/2012 02:26 PM, j.w.f.van_der_heij...@lumc.nl wrote:
Hi all,
I have added
Hello,
I try to use the visualization tool of my local instance of galaxy under
ubuntu. Everytime I try to create a feature track from a sam file, I get the
following error:
/bin/sh samtools not found
I have installed samtools from ubuntu reposotories and it works well as I can
call it from
Hi,
I am trying to install the mothur toolsuite via the toolshed but this
returns in an HTTP 500 error:
URL:
Hello,
The deadline to apply for the GMOD Summer School is in one week, July
9th. The application is available as a Google Form:
https://docs.google.com/spreadsheet/embeddedform?formkey=dG5hNGFiQ3UwYTV2LUZxZW04Qm1yZXc6MQ
In the GMOD Summer School (August 24-29, 2012) we will cover the
Hello Matthias,
I've just updated the tool shed to changeset revision 7332:e54f7684c919 and
I've successfully installed the mothur toolsuite. This revision includes a
fix that may be related to the issue you encountered. However, before you try
reinstalling, can you reply with answers to
___
On 7/1/12 3:05 AM, Katrien Bernaerts wrote:
Dear,
I am making a Galaxy appliciation with a text area. In the text area,
the user can copy/paste sequences. However, all carriage returns (e.g.
after the comment line) are converted to
Sure enough, this fixed the problem. I just installed the latest Sun JRE
and it is working now. Thanks for the suggestion! I would have never
guessed.
-Josh
On Mon, Jun 25, 2012 at 11:34 AM, simon andrews
simon.andr...@babraham.ac.uk wrote:
Yes, that's the broken version of gcj. I don't
Hello,
It's likely that samtools is not in Galaxy's path because Trackster uses the
same path as Galaxy does. Also, many tools in Galaxy use the Galaxy PySam egg
rather than the samtools binary, so it's possible that you can run a tool that
uses samtools without the binary in Galaxy's path.
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