On Wed, Mar 2, 2011 at 2:31 PM, Peter Cock wrote:
> On Thu, Feb 10, 2011 at 5:58 PM, Peter Cock wrote:
>> Hi all,
>>
>> I'm aware that in an individual tool's XML wrapper you can add
>> hidden="true" to the element to hide the tool from the
>> listing shown in Galaxy's left hand panel (but the t
Hi all,
The issue I raised below about column alignment in the display of
tabular files still affects the current latest release - would you like me
to turn my little proposed patch into a bitbucket pull request?
Thanks,
Peter
-- Forwarded message --
From: Peter Cock
Date: Mon,
Hey Peter,
I must have missed this the first time through, I like the change below and can
apply it.
-Dannon
On Oct 30, 2012, at 8:26 AM, Peter Cock wrote:
> Hi all,
>
> The issue I raised below about column alignment in the display of
> tabular files still affects the current latest release
On Mon, Oct 29, 2012 at 9:23 PM, Todd Oakley
wrote:
> We've developed a large number of tools to allow my lab to conduct
> phylogenetic analyses in Galaxy. Inspired by the mothur package in Galaxy,
> which is all in one repo, I made the decision to add all our related tools
> to 1 repo on the tool
Hi all,
I have a few general questions about best practices in tool development
and would like to collect a few opinions.
Maybe the Intergalactic Utilities Commission can discuss some points at
their first meeting.
1. How to handle dependencies that are not guaranteed to exist for a
large time.
Hi Galaxy-team,
I'm running Galaxy on my local system, but recently get an coding error.
The database I'm using is postgresql, I also modified part of the code,
hope that will not make things complex.
Looks like the tool generate a pdf file, and a geek of the file contains
some binary code which
James,
Yes, I think discovery is the main problem, and your suggestion
would help. I suppose having conventions would also help discovery and
understanding in general, but that is difficult to achieve in a
community-based project.
Todd
On 10/30/2012 8:00 AM, James Taylor wrote:
On Mon,
Hi,
I contacted with this question vendor tech support (Dell), but they could not
answer (or did not want to) and directed me to Galaxy developers. I am using
RHEL58 and SciLinux55 and want to install a local instance of Galaxy. Both my
systems are based on Python 2.4. Question - can I install
Dear galaxy developers--
I'd like to bring your attention to the call for participation included below
this message. A "Phylotastic" system is a distributed tree-of-life delivery
system composed of web services. Although it is not readily apparent from the
presentation linked below, the proje
Hi Galaxy-Team,
After reading a message on this mailing list about the job splitter I began
to investigate what and how this is used. Unfortunately I have been unable
to find any documentation on your website for it.
Am I blind and missing it or is it yet to be properly documented?
Sorry if this
On Tue, Oct 30, 2012 at 11:20 PM, Edward Hills wrote:
> Hi Galaxy-Team,
>
> After reading a message on this mailing list about the job splitter I began
> to investigate what and how this is used. Unfortunately I have been unable
> to find any documentation on your website for it.
>
> Am I blind an
On Tue, Oct 30, 2012 at 2:17 PM, Dannon Baker wrote:
> Hey Peter,
>
> I must have missed this the first time through, I like the change below and
> can apply it.
>
> -Dannon
I see that's gone in, thanks:
https://bitbucket.org/galaxy/galaxy-central/changeset/c0d8a9c916a5
Peter
__
Thanks Peter.
My next question is, I have found that VCF files don't get split properly
as the header is not included in the second file as is usually required by
tools (such as vcf-subset). I have read the code and am happy to implement
this functionality but am not to sure where this would best
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