My guess what's going on here is that you're still logged in as the ubuntu
user. `sudo su galaxy` and give it another shot.
-Dannon
On Dec 22, 2012, at 1:51 PM, Greg Von Kuster wrote:
> Hi Quang,
>
> I didn't realize you were running on the cloud, which is not my area of
> expertise - my in
Hi Quang,
I didn't realize you were running on the cloud, which is not my area of
expertise - my instructions were for a local Galaxy instance. I'll let others
with more knowledge of the cloud environment answer your question. Please keep
all replies on the mail list to enable optimal respons
Hi Quang,
You'll need to upgrade your Galaxy instance to the distribution release that
went out on December 20. Here is the link to the news brief for the December
20 release.
http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20
>From this point forward, all communication between Galaxy and
The toolshed dependency installation capabilities will fill this exact role --
for examples see how the blast+ suite or some of the other tools already
migrated out of the codebase have been configured. When you install these
repositories from the toolshed you have the option to automatically d
Hoping for the ease of apt-get for installing the binaries. Would be great
if you could make that a requirement for installing specific version of
binaries that align with the XML mapping in Galaxy. Would go a long way to
make this easy and at the same time minimize the support requirements on
why
The cloud automated update (through the admin UI) won't pull updated any
updated binaries -- that's up to you just like for a local install, and you
could still do it by ssh'ing in. It will update all galaxy tool wrappers (the
.xml) that come with the distribution, but that's not the binary ver
If I do the update will that also pull the latest versions of TopHat2 and
Bowtie2 as an example or just the Galaxy software?
Any guess on when the next distribution will release occur?
On 12/22/12 9:04 AM, "Dannon Baker" wrote:
>No -- we're reorganizing the storage approach the cloud uses and w
No -- we're reorganizing the storage approach the cloud uses and will not be
updating for this distribution release. Updates to the cloud deployment will
most likely resume with the next distribution.
Until then, you can always update your individual cloud instances to any
revision you'd like.
Is the cloud man Amazon EC2 instance updated with the latest?
From: Jennifer Jackson mailto:j...@bx.psu.edu>>
Date: Thursday, December 20, 2012 8:49 PM
To: Galaxy Announce
mailto:galaxy-annou...@bx.psu.edu>>, Galaxy User
mailto:galaxy-u...@bx.psu.edu>>, Galaxy Dev
mailto:galaxy-...@bx.psu.edu>>
