Hi,
It was suggested recently that Galaxy would soon be providing the ability
to upload multiple files rather than single files. Does anyone know when this
might be available in Galaxy? I've downloaded the most recent version of Galaxy
but as yet it is not present in the "stable" version
Th
Hi all,
I have a tool that receives multiple inputs, and it is working fine if I
run it stand alone. However, I want to create a workflow where this tool
receive as an input the output of other tools.
I can connect the output from the other tools in the input of this tool,
but the tool receives o
Hello Eric,
The Tool Shed wiki is currently undergoing significant changes which will
hopefully result in an improved set of documentation. This is a high priority
between now and October ( see
https://trello.com/c/Gg0jnll7/191-wiki-improvements and
https://trello.com/c/uHyAaCLT/176-tasks-for
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Hi Greg,
Sorry about that, toolshed development hasn't been very visible in my
view of galaxy thus far, so it seemed like asking someone who knew would
be the fastest route here. I'll ensure my future inquires go to galaxy-dev.
On 07/15/2014 02:18 PM
Hello Eric,
Please use Biostar or the Galaxy dev mail list rather than individual email
addresses in order to ensure faster responses. Pleasse see my responses below.
On Jul 14, 2014, at 10:20 AM, Eric Rasche wrote:
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> Howdy Greg,
>
> Since
Are the problems described in this thread occurring with the latest Galaxy
release? The references to the code lines do not seem to reflect the latest
Galaxy release.
Thanks,
Greg Von Kuster
On Jul 7, 2014, at 10:34 AM, Nicolas Lapalu
wrote:
> Hi
>
> There's a bug in the
> "galaxy-dist/l
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Hi Peter,
I saw that in an initial search for genbank modules, however it didn't
meet our requirements (lack of features/"heavy" by requiring all of
emboss). And, you are correct, it doesn't fix the problem. Thanks for
the suggestion.
Cheers,
Eric
O
Hello Ben,
you can configure your Galaxy instance to use your cluster in the
job_conf.xml file:
https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
You can set up your instance to use your cluster by default for all jobs
or only for specific jobs.
Here is a part of my job_conf.xml f
Hello, everyone,
I am new here, and I am trying to configure galaxy with a cluster.
I have 3 servers. One for galaxy server, two for cluster computing. And
I followed "Running Galaxy Tools on a Cluster" done the configuration.
Now I have 2 questions:
1. How to ve
Hi Saket,
>From memory the Twill tests are fragile with the output file order in the XML.
John was discussing switching the default from the Twill to API backend,
not sure when that is happening though...
Peter
On Tue, Jul 15, 2014 at 9:31 AM, Saket Choudhary wrote:
> I recently updated tests
I recently updated tests for one of my wrappers and came across this
strange behaviour:
The twill based testing reports a failure:
https://travis-ci.org/saketkc/galaxy_tools/jobs/29956682#L1463
whereas, the API based testing shows success:
https://travis-ci.org/saketkc/galaxy_tools/jobs/29956683
Hi Eric
There is already a genbank format in the EMBOSS datatypes
(although there is talk of defining this and others in a set of
smaller repositories defined as its dependencies for more
modularity). Note it uses "genbank" not "gb" as the name!
https://toolshed.g2.bx.psu.edu/view/devteam/emboss_
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