Hi all,
I've seen several posts for jobs which stay queued and never start
with an installation of galaxy on a cluster.
But our installation is just a local instance of galaxy in 1 PC and I
have more than 100 jobs which stay queued and never start.
How can I debug this problem (my version of galax
On 23/07/2014 11:14, julie dubois wrote:
> Hi all,
> I've seen several posts for jobs which stay queued and never start
> with an installation of galaxy on a cluster.
> But our installation is just a local instance of galaxy in 1 PC and I
> have more than 100 jobs which stay queued and never start.
Hi Julie
Are there any jobs running at all? What do you get when you click on
"Manage jobs" in the admin menu? Maybe you have some old jobs 'running'
which are now blocking your queue?
Hans-Rudolf
On 07/23/2014 11:14 AM, julie dubois wrote:
Hi all,
I've seen several posts for jobs which
Dear all
I have several smallish BLAST databases that I would like to provide in
a data library. I create them in a history with the makeblastdb tool and
them try to add them to the library. I see that for each blast db there
is an empty file created (like /path/dataset_12345.dat) and a folder
On Wed, Jul 23, 2014 at 10:47 AM, Ulf Schaefer wrote:
> Dear all
>
> I have several smallish BLAST databases that I would like to provide in
> a data library. I create them in a history with the makeblastdb tool and
> them try to add them to the library. I see that for each blast db there
> is an
Hi Hans-Rudolf,
Thanks for your answer.
I've launched lot of jobs since monday. And some jobs were finished
and some jobs never started.
In "Manage jobs" I can see jobs queued because they need inputs which
are queued, so I think it's normal.
But other jobs are described like this :
9554 user_l
Dear Peter
Thanks for your reply.
I can import an html report (e.g. FastQC output) successfully into a new
history from a data library. But the .dat file for the html is not empty
like the one for the blastdb. Makes me think that I could do this with a
blast db as well, if only it would not ch
Interesting hypothesis - you may well be right.
Galaxy guys - who is the expert to talk to on this and/or where
in the code should we be looking?
Thanks,
Peter
On Wed, Jul 23, 2014 at 11:22 AM, Ulf Schaefer wrote:
> Dear Peter
>
> Thanks for your reply.
>
> I can import an html report (e.g. Fa
On 07/23/2014 12:05 PM, julie dubois wrote:
Hi Hans-Rudolf,
Thanks for your answer.
I've launched lot of jobs since monday. And some jobs were finished
and some jobs never started.
In "Manage jobs" I can see jobs queued because they need inputs which
are queued, so I think it's normal.
But oth
Dear All
apologies. Another simple question.
When I attempt to load tools from the test toolshed it give a relocation error.
Are these links currently down (or am I making a mistake) and if so, does
anybody have an idea as to when these will be re-instated.
I am particular keen to install the
I'm using a MySQL database !!!
But may be such database-lock can appear because of my universe.ini
configuration file.
Here it's the lines concerning the database :
database_engine_option_pool_size = 10
database_engine_option_max_overflow = 20
database_engine_option_pool_recycle = -1
database_engi
On 07/23/2014 02:13 PM, julie dubois wrote:
I'm using a MySQL database !!!
But may be such database-lock can appear because of my universe.ini
configuration file.
Here it's the lines concerning the database :
database_engine_option_pool_size = 10
database_engine_option_max_overflow = 20
databa
Problem with automation is I could create dozens of templates over the
next several years and consume less time in aggregate than it would
take me to automate this. Nonetheless, there is a documentation
component here that is important so I did enough to document - if
someone wants to automate from
On Wed, Jul 23, 2014 at 2:42 PM, John Chilton wrote:
> Problem with automation is I could create dozens of templates over the
> next several years and consume less time in aggregate than it would
> take me to automate this. Nonetheless, there is a documentation
> component here that is important s
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