You would have my vote too for this, is there a trello card for it?
Stef
- Original message - From: Lukasse, Pieter
pieter.luka...@wur.nl To: Ross ross.laza...@gmail.com
Cc: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject:
Re: [galaxy-dev] filtering a param of type
Hello,
I downloaded Galaxy a few months ago but I just noticed that
the citations tag doesn't work on my download.
The info on the hg pull I have is:
hg tip
changeset: 13771:7a4d321c0e38
branch: stable
tag: tip
user:Nate Coraor n...@bx.psu.edu
date:Wed
This feature was added with the August 2014 release and it looks like
you are still on the June release (latest_2014.06.02). You will need
to upgrade to the August or October release (remember to run tool
migrations). (This feature touched a number of different components
and so I don't have a
Hi ,
I am trying to get a dependency to work in practice (when running a tool after
the installation). But I keep getting the following message when running the
tool:
[sshexec] galaxy.tools.deps DEBUG 2014-10-24 16:04:15,514 Building dependency
shell command for dependency 'R_bioc_metams'
On Fri, Oct 24, 2014 at 10:18 AM, Lukasse, Pieter pieter.luka...@wur.nl wrote:
Hi ,
I am trying to get a dependency to work in practice (when running a tool
after the installation). But I keep getting the following message when
running the tool:
[sshexec] galaxy.tools.deps DEBUG
Pieter,
please try to add your dependencies to a tool_dependencies.xml file not
the repository_dependencies.xml file.
repository_dependencies.xml is for datatypes and for workflow
dependencies, such things that need to be there, but that are not
referenced from the tool.
Hope this helps,
Bjoern
To Whom it May Concern,
Would it be possible to add a way to convert 2bit files to FASTA within Galaxy?
We would like IGB users to be able to pull genome files (in 2bit) directly from
the IGBQuickload site into Galaxy, convert them to FASTA and then use that to
align against. This way a user
Hi,
I'm running a fork of galaxy-central latest_2014.08.11. The instance is
configured to run jobs on a SLURM cluster. The problem is that the SLURM
controller sometimes becomes too busy which results in errors like:
galaxy.jobs.runners.drmaa INFO 2014-10-23 21:10:47,768 (1813/22896754) job
left
I can confirm it worked on my server as well (recent release)
From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
on behalf of John Chilton [jmchil...@gmail.com]
Sent: Friday, October 24, 2014 3:57 PM
To: James Mullan
Cc:
I originally posted this question https://biostar.usegalaxy.org/p/9401/
on the Galaxy Biostars, but later realized that galaxy-dev is probably more
appropriate. So, here it goes.
I'm trying to automate the installation of a tool's dependency with a tool
dependency definition repository. During
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