Hello,
I installed 'ebio_deseq' tool via Admin/Tool sheds, and I am getting this
error (looks like someting is making R plotting code unhappy).
Error running DESeq analyse: Error in if (!ok) warning("some notches went
outside hinges ('box'): maybe set notch=FALSE") :
missing value where TRUE/
Hello,
There is a tool called "EBI SRA" on public galaxy https://main.g2.bx.psu.edu/
I was wondering if there is a way to add it to my local instance of
galaxy. I tried searching through the tool shed
http://toolshed.g2.bx.psu.edu/ but I didn't find anything
thanks,
Sergei
--
Sergei (Siarhei
Hello,
There is an option of FTP upload on public galaxy, but my local galaxy
lacks this capability.
Is there a way to configure FTP upload for local galaxy?
thanks,
Sergei
--
Sergei (Siarhei Manakou) Manakov
California Institute of Technology
+1 626 395 3593
___
sorry, I meant "is NOW trying to call the correct executable", but I still
get the error.
thanks,
S.
On 1 May 2012 14:51, Sergei Manakov wrote:
> hi Dan,
>
> Thanks for your replay. I have now installed MACS 1.3.7.1, so the script
> macs_wrapper.py is not trying to call
uld I look at it?
thanks,
Sergei
On 9 April 2012 18:13, Daniel Blankenberg wrote:
> Hi Sergei,
>
> The current MACS tool that comes with Galaxy uses MACS 1.3.7.1 from
> http://liulab.dfci.harvard.edu/MACS/Download.html.
>
>
> Thanks for using Galaxy,
>
> Dan
>
Hello,
I am trying to set up MACS tool on local Galaxy. Galaxy comes with
it's macs-wrapper.py and macs-wrapper.xml, but it wants to use "macs"
not "macs14" executable.
I tried to to editing macs-wrapper.py to make it use "macs14" instead,
but some options are not the same between the two, and th
