Dear All,
Our toolshed tools include a custom display application. Although the display
application is open source (
https://bitbucket.org/Andrew_Brock/proteomics-visualise ) we do not yet have a
public server for it. Actually, at present it isn't possible to have the
application work proper
Hi Ira,
You'll want to set this up as a dynamic display application, where the link id,
name, url, port, etc are defined in an external tab-delimited file. Most of the
displays included in the dist are set up this way, one example would be the
display_applications/ucsc/bam.xml.
For an example
Hi Ira,
You'll need to include an entry for the display application in a
datatype_conf.xml file in the tool shed repository- this will result in the
display application being properly installed with the repository and made
functional in the local Galaxy instance. For details about this, see th
Hi Dan and Greg,
Thanks for your answers on this. So far I have managed to make things work
following Dan's suggestion ... except that I can't seem to get my configuration
data file to install into tool-data. I'm not sure why this might be since all
my XXX.loc.sample files install into tool-
Hi Ira,
Sample fiel handling for installed tool shed repositories was restricted to
.loc.sample files as you discovered. I've enhanced this feature to copy all
appropriate .sample files contained in the installed repository to the
tool-data directory of the Galaxy instance to which the reposit
Hi Greg,
Thanks ... that's great. It's all working now.
Ira
On 04/05/2012, at 3:41 AM, Greg Von Kuster wrote:
> Hi Ira,
>
> Sample fiel handling for installed tool shed repositories was restricted to
> .loc.sample files as you discovered. I've enhanced this feature to copy all
> appropria
