Hi again
You were right. Restarting all processes solved the problem and Bismark in
now up and running.
Bests,
Nikos
2013/9/4 Nate Coraor
> On Sep 4, 2013, at 10:08 AM, Nikos Sidiropoulos wrote:
>
> > Hi Nate
> >
> > Yes, it is a multiprocess setup. But is it because we have more than one
> w
Hi Nate
Yes, it is a multiprocess setup. But is it because we have more than one
web-servers, handlers or both?
Because if it's just the web-servers I could just scale it down to one
since it doesn't seem necessary with our number of users. It's would be
nice not to have to restart even for the t
On Sep 4, 2013, at 9:17 AM, Nikos Sidiropoulos wrote:
> Hi Bjørn
>
> > that does not look like a bismark error. Is it happen with other tools
> > as well?
>
> No, I have only experienced it with Bismark.
>
> > Not sure, sorry. But you should migrate to the new job configuration,
> > better soo
On Sep 4, 2013, at 10:08 AM, Nikos Sidiropoulos wrote:
> Hi Nate
>
> Yes, it is a multiprocess setup. But is it because we have more than one
> web-servers, handlers or both?
>
> Because if it's just the web-servers I could just scale it down to one since
> it doesn't seem necessary with our n
Hi Bjørn
> that does not look like a bismark error. Is it happen with other tools
> as well?
No, I have only experienced it with Bismark.
> Not sure, sorry. But you should migrate to the new job configuration,
> better sooner than later.
I am starting to get that idea. There are jobs still runn
Hi Nikos,
> Hi all
>
>
> I installed bismark from the toolshed (bgruening) with all
> dependencies having been installed successfully and I generated the
> genomes according to the instructions.
>
>
> While trying to test the tool I got the following error.
>
>
> galaxy.jobs.handler ERROR 20
Hi all
I installed bismark from the toolshed (bgruening) with all dependencies
having been installed successfully and I generated the genomes according to
the instructions.
While trying to test the tool I got the following error.
galaxy.jobs.handler ERROR 2013-09-04 13:14:26,267 Failed to genera
