On Fri, Oct 24, 2014 at 10:17 PM, Lukasse, Pieter wrote:
> Hi Bjoern, John,
>
> thanks, this worked!
>
> So: I have to add a repository dependency to my tool_dependencies.xml
> file and NOT to my repository_dependencies.xmlI must say it is somewhat
> confusing. Somehow I had this idea that too
es.xml was for
> external tools But I'm happy it finally works!
>
> Thanks again,
>
> Pieter.
>
> -Original Message-
> From: Björn Grüning [mailto:bjoern.gruen...@gmail.com]
> Sent: vrijdag 24 oktober 2014 16:23
> To: Lukasse, Pieter; galaxy-dev@
py it finally works!
Thanks again,
Pieter.
-Original Message-
From: Björn Grüning [mailto:bjoern.gruen...@gmail.com]
Sent: vrijdag 24 oktober 2014 16:23
To: Lukasse, Pieter; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Dependencies not working on toolshed?
Pieter,
please try t
Pieter,
please try to add your dependencies to a tool_dependencies.xml file not
the repository_dependencies.xml file.
repository_dependencies.xml is for datatypes and for workflow
dependencies, such things that need to be there, but that are not
referenced from the tool.
Hope this helps,
Bjoern
On Fri, Oct 24, 2014 at 10:18 AM, Lukasse, Pieter wrote:
> Hi ,
>
>
>
> I am trying to get a dependency to work in practice (when running a tool
> after the installation). But I keep getting the following message when
> running the tool:
>
>
>
>
>
> [sshexec] galaxy.tools.deps DEBUG 2014-10-24 1
Hi ,
I am trying to get a dependency to work in practice (when running a tool after
the installation). But I keep getting the following message when running the
tool:
[sshexec] galaxy.tools.deps DEBUG 2014-10-24 16:04:15,514 Building dependency
shell command for dependency 'R_bioc_metams'
