On Mon, Jul 28, 2014 at 9:43 AM, Peter Cock wrote:
> On Mon, Jul 28, 2014 at 8:28 AM, Ulf Schaefer wrote:
>> Dear Nate, dear Peter
>>
>> Sorry for the delay in replying.
>>
>> I can import both HTML and blastdb from a history to a data library. If
>> I try to get the data out of the library into
Thanks for tracking down the problem - it sounds like it is a Galaxy
bug then so I have created a Trello card
(https://trello.com/c/bNEKfOWR).
-John
On Wed, Jul 30, 2014 at 7:06 AM, Peter Cock wrote:
> On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer
> wrote:
>> Dear Nate, dear Peter
>>
>> Again
On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer wrote:
> Dear Nate, dear Peter
>
> Again, sorry for the delay in replying.
>
> Yes I can. It looks like this
>
> [galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat
> [galaxy@srv ~]$ ls /galaxy/database/files/081/dataset_81002_files/
> bl
Dear Nate, dear Peter
Again, sorry for the delay in replying.
Yes I can. It looks like this
[galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat
[galaxy@srv ~]$ ls /galaxy/database/files/081/dataset_81002_files/
blastdb.nhd blastdb.nhi blastdb.nhr blastdb.nin blastdb.nog
blastdb
On Mon, Jul 28, 2014 at 8:28 AM, Ulf Schaefer wrote:
> Dear Nate, dear Peter
>
> Sorry for the delay in replying.
>
> I can import both HTML and blastdb from a history to a data library. If
> I try to get the data out of the library into anothre history, I am
> successful for the html but not for
Dear Nate, dear Peter
Sorry for the delay in replying.
I can import both HTML and blastdb from a history to a data library. If
I try to get the data out of the library into anothre history, I am
successful for the html but not for the blastdb. The problem seems to be
that the primary data file
On Thu, Jul 24, 2014 at 2:50 PM, Nate Coraor wrote:
> On Jul 23, 2014, at 6:42 AM, Peter Cock wrote:
>
>> Interesting hypothesis - you may well be right.
>>
>> Galaxy guys - who is the expert to talk to on this and/or where
>> in the code should we be looking?
>>
>> Thanks,
>>
>> Peter
>
> I thin
On Jul 23, 2014, at 6:42 AM, Peter Cock wrote:
> Interesting hypothesis - you may well be right.
>
> Galaxy guys - who is the expert to talk to on this and/or where
> in the code should we be looking?
>
> Thanks,
>
> Peter
I think there's a bit of a mixup here - Peter, I believe you were aski
Interesting hypothesis - you may well be right.
Galaxy guys - who is the expert to talk to on this and/or where
in the code should we be looking?
Thanks,
Peter
On Wed, Jul 23, 2014 at 11:22 AM, Ulf Schaefer wrote:
> Dear Peter
>
> Thanks for your reply.
>
> I can import an html report (e.g. Fa
Dear Peter
Thanks for your reply.
I can import an html report (e.g. FastQC output) successfully into a new
history from a data library. But the .dat file for the html is not empty
like the one for the blastdb. Makes me think that I could do this with a
blast db as well, if only it would not ch
On Wed, Jul 23, 2014 at 10:47 AM, Ulf Schaefer wrote:
> Dear all
>
> I have several smallish BLAST databases that I would like to provide in
> a data library. I create them in a history with the makeblastdb tool and
> them try to add them to the library. I see that for each blast db there
> is an
Dear all
I have several smallish BLAST databases that I would like to provide in
a data library. I create them in a history with the makeblastdb tool and
them try to add them to the library. I see that for each blast db there
is an empty file created (like /path/dataset_12345.dat) and a folder
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