On Mon, Jul 28, 2014 at 9:43 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Jul 28, 2014 at 8:28 AM, Ulf Schaefer ulf.schae...@phe.gov.uk wrote:
Dear Nate, dear Peter
Sorry for the delay in replying.
I can import both HTML and blastdb from a history to a data library. If
I try to
Dear Nate, dear Peter
Again, sorry for the delay in replying.
Yes I can. It looks like this
[galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat
[galaxy@srv ~]$ ls /galaxy/database/files/081/dataset_81002_files/
blastdb.nhd blastdb.nhi blastdb.nhr blastdb.nin blastdb.nog
On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer ulf.schae...@phe.gov.uk wrote:
Dear Nate, dear Peter
Again, sorry for the delay in replying.
Yes I can. It looks like this
[galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat
[galaxy@srv ~]$ ls
Thanks for tracking down the problem - it sounds like it is a Galaxy
bug then so I have created a Trello card
(https://trello.com/c/bNEKfOWR).
-John
On Wed, Jul 30, 2014 at 7:06 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer
Dear Nate, dear Peter
Sorry for the delay in replying.
I can import both HTML and blastdb from a history to a data library. If
I try to get the data out of the library into anothre history, I am
successful for the html but not for the blastdb. The problem seems to be
that the primary data
On Mon, Jul 28, 2014 at 8:28 AM, Ulf Schaefer ulf.schae...@phe.gov.uk wrote:
Dear Nate, dear Peter
Sorry for the delay in replying.
I can import both HTML and blastdb from a history to a data library. If
I try to get the data out of the library into anothre history, I am
successful for the
On Jul 23, 2014, at 6:42 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
Interesting hypothesis - you may well be right.
Galaxy guys - who is the expert to talk to on this and/or where
in the code should we be looking?
Thanks,
Peter
I think there's a bit of a mixup here - Peter, I
Dear all
I have several smallish BLAST databases that I would like to provide in
a data library. I create them in a history with the makeblastdb tool and
them try to add them to the library. I see that for each blast db there
is an empty file created (like /path/dataset_12345.dat) and a folder
On Wed, Jul 23, 2014 at 10:47 AM, Ulf Schaefer ulf.schae...@phe.gov.uk wrote:
Dear all
I have several smallish BLAST databases that I would like to provide in
a data library. I create them in a history with the makeblastdb tool and
them try to add them to the library. I see that for each
Dear Peter
Thanks for your reply.
I can import an html report (e.g. FastQC output) successfully into a new
history from a data library. But the .dat file for the html is not empty
like the one for the blastdb. Makes me think that I could do this with a
blast db as well, if only it would not
Interesting hypothesis - you may well be right.
Galaxy guys - who is the expert to talk to on this and/or where
in the code should we be looking?
Thanks,
Peter
On Wed, Jul 23, 2014 at 11:22 AM, Ulf Schaefer ulf.schae...@phe.gov.uk wrote:
Dear Peter
Thanks for your reply.
I can import an
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