Hi Rob,
Thanks for the suggestion, a similar change has just been added in changeset
7306:319b2b0e832c.
Thanks for using Galaxy,
Dan
On Jun 23, 2012, at 1:09 AM, Rob Syme wrote:
> Thanks Dan. I'll pull in the change on Monday (don't have access to our
> instance atm).
>
> On a related no
Thanks Dan. I'll pull in the change on Monday (don't have access to our
instance atm).
On a related note which might be of interest to Brad, can I suggest that
$GALAXY_ROOT/display_applications/igv/[bam/sam].xml include:
&name=${bam_file.name}
at the the end of the url generated for IGV viewing.
Hi Rob,
Changeset 7300:f197c4346cc4, which is currently available in galaxy-central,
should allow the external display applications to work when require_login =
True, thanks for reporting this error. Please let us know if you encounter
additional issues.
Thanks for using Galaxy,
Dan
On Jun
While I have not yet added IGV for display, I would like to and I would also
like to add tablet so I'm interested in how this plays out.
Hopefully someone more knowledgable will chime in.
Meanwhile, I'll try to help. I think that the 302 redirect indicates that
REMOTE_USER is not being set or
The problem seems to be in the lack of authentication by the request sent
by IGV. The galaxy instance is set to require a username and password with
"require_login = True" in universe_wsgi.ini, which means that when IGV
attempts to download the BAM file at
http://example.org/galaxy/display_applicat
Sorry, the subject should read "mistakenly routed to root". The question
still stands.
-r
On Fri, Jun 22, 2012 at 2:10 PM, Rob Syme wrote:
> Galaxy type: local
>
> I'm trying to get IGV to download files served from the galaxy instance
> through "display_application".
> When IGV makes a request
Galaxy type: local
I'm trying to get IGV to download files served from the galaxy instance
through "display_application".
When IGV makes a request for the BAM file, it is re-routed to root like so:
wget
http://example.org/galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224a
