[galaxy-dev] SLURM and hidden success

2013-11-08 Thread Andrew Warren
Hello all, We are in the process of switching from SGE to SLURM for our galaxy setup. We are currently experiencing a problem where jobs that are completely successful (no text in their stderr file and the proper exit code) are being hidden after the job completes. Any job that fails or has some t

Re: [galaxy-dev] SLURM and hidden success

2013-11-11 Thread John Chilton
This is really odd. I see no code in the job runner stuff at all that could cause this behavior outside the context of the dataset being marked hidden as part of a workflow - let alone something DRM specific that could cause this. Are you rerunning an existing job that has been marked this way in a

Re: [galaxy-dev] SLURM and hidden success

2013-11-11 Thread Andrew Warren
Hi John, Thanks so much for the reply. After investigating this more today it turns out, as you might have suspected, SLURM was a red herring. Despite our attempts to faithfully rsync everything between the two servers it looks like there was a problem with our workflows in the new database. Stran