Re: [galaxy-dev] Setting up reference genomes for GATK Genotyper

2013-07-10 Thread Marco Ocana
Hi, A follow up to my own question. When I setup up the Galaxy instance from Cloudman the GATK tools were not included automatically. Something most have gone wrong during the upgrade process from Mercurial. Based on Dan Blankenberg's advice, I was able to got the GATK tools to show up in Galaxy

[galaxy-dev] Setting up reference genomes for GATK Genotyper

2013-07-08 Thread Marco Ocana
Hi, I am running an instance of Galaxy that I setup using Cloudman. We are trying to use the GATK Unified Genotyper, but we are missing the reference genomes. I saw in your website instructions on how to setup reference genomes for some other tools, but not for the Unified Genotyper. Where can I