Re: [galaxy-dev] Some plugin for digital normalization

2014-01-08 Thread Michael R. Crusoe
galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-i686-ucs4.egg/Cheetah/Template.py", >>> line 1004, in __str__ >>> return getattr(self, mainMethName)() >>> File "cheetah_DynamicallyCompiledCheetahTemplate_1388113247_46_38074.py", >>> line 111, in

Re: [galaxy-dev] Some plugin for digital normalization

2014-01-08 Thread Cristian Alejandro Rojas
espond >> NotFound: cannot find 'hashsize' >> >> I have tried change parameters, using the default parameters, advanced >> parameters but it didn't work. Do you know what am i doing wrong? >> >> Cheers! >> >> >&g

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-29 Thread Michael R. Crusoe
parameters, advanced > parameters but it didn't work. Do you know what am i doing wrong? > > Cheers! > > > 2013/12/26 Michael R. Crusoe > > > From: Cristian Alejandro Rojas >> > Date: December 26, 2013 2:37 AM >> > To: galaxy-dev@lists.bx.psu.edu

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-26 Thread Cristian Alejandro Rojas
ashsize' I have tried change parameters, using the default parameters, advanced parameters but it didn't work. Do you know what am i doing wrong? Cheers! 2013/12/26 Michael R. Crusoe > > From: Cristian Alejandro Rojas > > Date: December 26, 2013 2:37 AM > > To: galaxy-de

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-26 Thread Michael R. Crusoe
> From: Cristian Alejandro Rojas > Date: December 26, 2013 2:37 AM > To: galaxy-dev@lists.bx.psu.edu > Subject: [galaxy-dev] Some plugin for digital normalization > Hello all, > > I've been searching in tool sheds(main and test) for a plugin to do digital normaliza

[galaxy-dev] Some plugin for digital normalization

2013-12-25 Thread Cristian Alejandro Rojas
Hello all, I've been searching in tool sheds(main and test) for a plugin to do digital normalization of reads, for example Trinity has one script to do this (./util/normalize_by_kmer_coverage.pl), diginorm is another alternative ( http://ged.msu.edu/papers/2012-diginorm/). Do you know if there i