Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-17 Thread Chorny, Ilya
the code. Thanks, Ilya -Original Message- From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Sunday, October 16, 2011 7:36 AM To: James Taylor Cc: galaxy-dev Subject: Re: [galaxy-dev] how do I pass the URL of the input and output

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-17 Thread Chorny, Ilya
-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Sunday, October 16, 2011 7:36 AM To: James Taylor Cc: galaxy-dev Subject: Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper? PDF report. Sent from my iPhone On Oct 15, 2011, at 7:36 PM, "

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-16 Thread Chorny, Ilya
PDF report. Sent from my iPhone On Oct 15, 2011, at 7:36 PM, "James Taylor" wrote: > Excerpts from Chorny, Ilya's message of 2011-10-14 23:46:25 +: >> Anyone know if it possible to pass the url (shown in the eye ball) to a tool >> wrapper? > > Ilya, this isn't currently supported because

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-15 Thread James Taylor
Excerpts from Chorny, Ilya's message of 2011-10-14 23:46:25 +: > Anyone know if it possible to pass the url (shown in the eye ball) to a tool > wrapper? Ilya, this isn't currently supported because it breaks the abstraction between the web interface and tools (tools shouldn't know they are be

[galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-14 Thread Chorny, Ilya
Anyone know if it possible to pass the url (shown in the eye ball) to a tool wrapper? Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: icho...@illumina.com Website: www.il