David, Tony,
I have not yet been able to reproduce the behavior you've reported here.
I will continue to investigate, but if you go to Manage installed tool
shed repositories in your Galaxy admin interface and select the Update
tool shed status option on the compute_q_values repository, your
Thanks for the response. I have made some progress, but I don't seem to be
out-of-the-woods yet.
I realized that when I had invoked
sh ./scripts/migrate_tools/0010_tools.sh
I had done it as root, rather than as user galaxy. Hence I did a
chmod -R galaxy:galaxy
on both the shed_tools/ and
Hi Tony,
It may be easiest to just uninstall / reinstall the repository from the Manage
installed tool shed repositories option in the admin menu.
Greg Von Kuster
On Apr 22, 2014, at 4:21 PM, Tony Kusalik kusa...@cs.usask.ca wrote:
Thanks for the response. I have made some progress, but I
Hi,
I am having a problem with updating our local Galaxy server, and I am hoping
someone can help me.
Yesterday I performed a 'hg incoming' command. A bunch of updates were
applied, from changeset 12443:ec9d31a8bc04
to changeset 13068:c05752549163. I restarted the server (in daemon mode),
I saw the same phenomenon. I think it stems from the current version of
compute_q_values pointing to unavailable revisions of both R and the
bioc_qvalue R package. Whoever maintains the compute_q_values needs to
straighten out the revision ids.
David Hoover
Helix Systems Staff
National
Hi,
I am having a problem with updating our local Galaxy server, and I am hoping
someone can help me.
Yesterday I performed a 'hg incoming' command. A bunch of updates were
applied, from changeset 12443:ec9d31a8bc04
to changeset 13068:c05752549163. I restarted the server (in daemon mode),
