Hi John,
I'm using your bitbucket fork.I still didn't finish all the needed job but
meanwhile it works great.
The two tools you add: multi-upload split - works great too - and are all
what I needed.
(I had only one patch which I had to add somewhere - I'm still trying to
understand the galaxy
Hi Hagai,
Actually, using a workflow, you are able to select multiple input files,
and let the workflow run separately on all input files.
I would proceed by creating a data library for all your fastq files,
which you can upload via FTP, or via a system directory.
You can use a sample of
Thanks for your answer.
I figured that there is an option to run a workflow on multiple files, but
I can't merge the outputs afterwardsl. I would like the workflow to return
one final output.
But you gave me another idea.
Can I somehow tell one workflow to run on other workflow output?
If this
Hagai,
Jorrit Boekel and I have implemented essentially literally what you described.
https://bitbucket.org/galaxy/galaxy-central/pull-request/116/multiple-file-datasets-implementation
Merge this in to your Galaxy tree
https://bitbucket.org/jmchilton/galaxy-central-multifiles-feb2013.
Switch
You cannot directly couple different workflows.
But you could indeed copy all outputs of the different workflows into
one history, and create a separate workflow with your tool to work on
all those input files.
Cheers,
Joachim
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9
John, that's seems great.
I will read this stuff and see if I can use it (The bed format isn't that
essential, bowtie can bam instead).
If it wont work I will try the other solution which doesn't need to change
the galaxy own code (Creating hundreds of workflow run, linking to their
outputs and
