Actually that actually worked. Couldn't see it before.
Thanks Nicola!
From: makis4e...@hotmail.com
To: nsora...@tiscali.it
Date: Wed, 17 Jun 2015 09:06:52 +0300
CC: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Login problem with Galaxy instance
Hi Nicola thanks for the help.
Hi Nicola thanks for the help. Unfortunately that didn't work. I was also
looking at the Galaxy log and I found this line right next to the login attempt:
galaxy.webapps.galaxy.controllers.user
WARNING 2015-06-16 18:44:33,165 Redirect URL is outside of Galaxy, will
redirect to Galaxy root inste
Maybe connected. this error (happening multiple times):
> Exception happened during processing of request from ('127.0.0.1', 37201)
> Traceback (most recent call last):
> File
> "/home/ubuntu/.virtualenvs/CM/local/lib/python2.7/site-packages/paste/httpser
Hi,
I have the following problem:
First, the job scheduling didn't work.
I tried to upload a file, but the job was waiting.
Then I checked "squeue", which timed out.
The slurm service was running.
Then I restarted the cluster.
Now I even have problems access the cloudman admin page.
Meaning, the
I am using postgres in production but want to validate my staging instance
before pushing it into production. I do this with the functional tests. I
guess I'll have to set up a postgres database for the staging instance as
well.
On Mon, Jun 15, 2015 at 10:32 AM, John Chilton wrote:
> Not exac
Hi Efthymios,
have you tried to delete the cookies in the browser?
That may fix the problem.
Cheers,
Nicola
Il 16.06.2015 17:46 Makis
Ladoukakis ha scritto:
> Hi I have some experience with setting up
Galaxy instances but I came across a very peculiar issue when trying to
setup the newest ver
I fixed the error. It have been the directory permissions.
Found in galaxy log:
> tool_shed.util.hg_util DEBUG 2015-06-16 16:17:04,045 Error cloning
> repository: [Errno 13] Permission denied:
> '/mnt/galaxy/galaxy-app/gbs_tools/testtoolshed.g2.bx.psu.edu'
>
> But the question with the error mes
Hi I have some experience with setting up Galaxy instances but I came across a
very peculiar issue when trying to setup the newest version.
While I am able to register as a new user when I try to login I get redirected
to the home page without being logged in.
In the galaxy.ini is I disable
The variables that get 'reset' are stored in this file
https://github.com/galaxyproject/cloudman/blob/master/cm/util/galaxy_conf.py#L133
You’d have to change the values in that file, upload the new cm.tar.gz to
your bucket and restart/relaunch the cluster.
It's on the agenda to fix this so it can
Dear all,
with older Galaxies (prior to latest_15.03 I think), you could satisfy
Galaxy's samtools dependence for indexing bam files by having a samtools
executable in tool-dependencies/samtools/default/bin (with the
tool-dependencies directory declared as tool_dependency_dir in
galaxy.ini of
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