-- Forwarded message --
From: Carl Eberhard
Date: Thu, Aug 20, 2015 at 2:46 PM
Subject: Re: [galaxy-dev] Get dataset/API ids for a dataset
To: Asma Riyaz
Cc: galaxy-dev
If I understand correctly, this begins to sound less like something the
visualization level can do and more s
If I understand correctly, this begins to sound less like something the
visualization level can do and more something that needs to be handled at
your tool level.
Let me repeat back what I understand to be the process:
1. Your pipeline is activated by the user and some initial step in the
pipeline
Hi Frederik,
at least with the API this is possible!
Sorry for not being helpful at all!
Bjoern
Hi
>
> is there a convenient way to change the genome build for a lot of
> files at once (e.g. a whole data library)?
>
> I want to ‘update’ to a newer genome build and the only way I found
> is to
Hi Carl,
Thank you for your reply. This definitely helps me get started, my question
being:
trans.history will get all the dataset ids in users history regardless of
which run the datasets are associated with. Hence if the user has multiple
bams loaded in history there will be no way of distingui
Hi,
I am working on writing some code that would allow for remotely executing
jobs and workflows in Galaxy.
Looking through the docs and examples that I have encountered, we are able
to run specific tools if we know what are the inputs needed.
Does the API (plain REST, bioblend, blend4j) allow for
Hi Mark,
please have a look at
https://github.com/bgruening/galaxy-rna-workbench-extra
Here we try to develop small scripts to load data into a library and
setting up everything for a workshop. Indeed this container was used for
a few workshops already but is still under development.
The plan is
Sounds like this will be an interesting meeting and quite germane to a
requirement of mine.
I want to achieve an environment as follows:
1) Galaxy Docker container (Thanks Bjorn :-) )with minimal tools deliverable to
course developers machine e.g. via Kitematic
2) Course developer adds minimal s
