Hi,
I'm new to galaxy and trying to set up a local blast tool, and maybe this
is due to a silly mistake
So far so good all is working but when trying to use blast2html i just get
a "blank" page (even if the html is being generated), this happens when
using the recommended setting in the configurat
Not from the admin interface right now. I noted this bug just the other day
and intended to fix it as it applied to us as well.
Until then, you can easily change the API key manually in the database.
Cheers,
Eric
2015-10-07 16:20 GMT-05:00 Ryan G :
> Hi all - I have external authentication estab
Hi all - I have external authentication established with our enterprise
wide LDAP working with Galaxy. I just noticed that I can no longer manage
API keys for users from the Admin Page -> API Keys. I get "Access to
Galaxy user controls is disabled. User controls are disabled when Galaxy
is confi
Hi John,
Yes, I came across a listing to enable this in /config/galaxy.ini for
Gridengine. Peter van Heusden brought this error to my attention. I have now
commented this out and can now upload files.
#drmaa_external_runjob_script =
/share/apps/galaxy/scripts/drmaa_external_runner.py
#drmaa_e
Hi Yvan,
> Hi Lance, Björn, Dan
>
> We are several scientists working on metagenomics in France and at a
> previous GUGGO (western France User Group) meeting, we mention the
> fact to "benchmark" our Galaxy pipelines. One is using new Qiime
> tools integration, one Mothur and the last one, the r
Dear Hans-Rudolf,
thank you very much pointing to that ressource!
I will have a look into it and try to contribute, too.
Best,
Sven.
On 7 October 2015 at 10:16, Hans-Rudolf Hotz wrote:
> Hi Sven
>
> Nice resource - thank you very much for sharing!
>
>
> Please allow me to suggest that you copy
Hi John,
Thanks for your comments. Upload was just a tool that I picked to test
my initial install, I hadn't installed any tools into the galaxy
instance at that time. I set it up to use a shared directory and it is
working fine now.
One of the goals for this second Galaxy instance at UGA is
Do you have drmaa_external_** options set in config/galaxy.ini? It
seems like maybe you do. I would try to get Galaxy working without
those first, just submitting everything as the Galaxy user.
-John
On Fri, Oct 2, 2015 at 4:05 PM, Richard Polich wrote:
> Hi All,
>
> Trying to setup a Galaxy clu
Hi Lance, Björn, Dan
We are several scientists working on metagenomics in France and at a previous
GUGGO (western France User Group) meeting, we mention the fact to "benchmark"
our Galaxy pipelines. One is using new Qiime tools integration, one Mothur and
the last one, the recently developped
Hi Lance,
I will help if I can. I also think we should begin too write 2-3 nice
tools in the beginning to test the handshake between them and lay the
ground work. This will also help to get familiar with the tool.
I still hope some one else from the community shows interest! :)
Thanks,
Bjoern
A
Hi Sven
Nice resource - thank you very much for sharing!
Please allow me to suggest that you copy or link your documents to the
'Galaxy Community Log Board':
https://wiki.galaxyproject.org/Community/Logs
This makes sharing and especially finding your documents much easier
Regards, Hans-Ru
Hello together,
not being an easy task to set up galaxy on a HPC cluster, satisfying user
and the IT department needs,
I would like to share our configuration (based on 15.07) to make it easier
for others to dive into this.
All configuration files and an installation manual is available at:
https
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